Array 1 2428-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSVA01000053.1 Pseudomonas aeruginosa strain So098 IPC677_53.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2427 28 100.0 33 ............................ TGGGGACCGCCCAGCCGAAGCCGGCTGCTCCGG 2366 28 100.0 32 ............................ GAGGGCGATCTCGACTTCTCGTCGATGATCAG 2306 28 100.0 32 ............................ TGTCCGCAGCAGGCCCTAGGGGATAACTGCGG 2246 28 100.0 33 ............................ ATCTTGATCTCCAGGTAGAAAGGGAAGGCGCTT 2185 28 100.0 32 ............................ TCGATGCCCCTCTTGCGAAGGGCATCTGAGAA 2125 28 100.0 32 ............................ GCAAGGCATGCAGCCGGGCACGAAGCTCTACG 2065 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 2005 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 1945 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 1885 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 1825 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 1765 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 1705 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 1645 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 1585 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 1525 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 1465 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 1405 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 1345 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 1285 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 1225 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 1165 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 1105 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 1045 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 985 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 925 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 865 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 805 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 745 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 685 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 625 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 565 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 505 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 445 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 385 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 325 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 265 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 205 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 145 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 85 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 25 25 89.3 0 .........................--- | ========== ====== ====== ====== ============================ ================================= ================== 41 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : G # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 36933-38640 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSVA01000029.1 Pseudomonas aeruginosa strain So098 IPC677_29.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36933 28 100.0 32 ............................ TCCAGTTGCGGGGCTCGGTAGAGCTTGTCCTG 36993 28 100.0 32 ............................ GAGTAGTCGCCGGTGTTCGACGCTGCCGAGTA 37053 28 100.0 32 ............................ TCACCATCATGCTTGTACGTGCCGCCGATCTC 37113 28 100.0 32 ............................ GGCTACCAATCGGCAGCGTCGAACACCGGCGA 37173 28 100.0 32 ............................ CTCTTCGCGGATCTTGGCCAGGAACGGGTCAA 37233 28 100.0 32 ............................ AAAACGCAGAGACCCGATGGCGTAATCTTCCG 37293 28 100.0 32 ............................ TGGCTGGAGCGGAGCGTCGGCGATAGCGCGCA 37353 28 100.0 32 ............................ AGTCTGCGCCAATGGAGAGGCCTTCCAGCCAT 37413 28 100.0 32 ............................ AGCACGCTGTGCTGAGCCACGACCTTTTCGTC 37473 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 37533 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 37593 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 37653 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 37713 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 37773 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 37833 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 37893 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 37953 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 38013 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 38073 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 38133 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 38193 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 38253 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 38313 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 38373 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 38433 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 38493 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 38553 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 38613 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 29 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47553-47165 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSVA01000029.1 Pseudomonas aeruginosa strain So098 IPC677_29.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47552 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 47492 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 47432 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 47372 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 47312 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 47252 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 47192 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //