Array 1 30223-29537 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUKV01000004.1 Chromobacterium haemolyticum strain H5244 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30222 28 100.0 32 ............................ TCCTGGGCCGTTGCCGGACGCACTTCCTGGCC 30162 28 100.0 32 ............................ AACAAGCAAGGCTGATCTGCCGTCGATACCGT 30102 28 100.0 32 ............................ ATCACCGCCGGCGCGTGTCCTGGGAATCTGAC 30042 28 96.4 32 .............T.............. TAAACCACCTGTCATGCCATCCCCAGAACGGT 29982 28 96.4 32 .............T.............. ACCCACGAAGAAGCGGCCGAGGCCATTAAAGC 29922 28 96.4 32 .............T.............. TCCATAAAAGAGAAAGGCCGCCTACATTGGCG 29862 28 100.0 32 ............................ ACGACGAAGGGTGTAGCGGTAGATGGGTGGGG 29802 28 100.0 30 ............................ ATGCAACAGAACCTGATCGACGCCGCGCGC 29744 28 100.0 32 ............................ ACTGCAGCGCCTCGCCGGCGTAGAACTCGGCG 29684 28 89.3 32 A............T....C......... TATCCGCAGACTCGATTGAAGACGTTGCAGAG 29624 28 92.9 32 .............T..A........... ACGATGCGGAGAAACGGGGGAATTTCGACTTG 29564 28 92.9 0 .............T.......C...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.0 32 GTTCTCTGCCGGACAGGCAGCTTAGAAA # Left flank : ACGCCGCCTTGCAGCGGCTGATGGCCGGCGACTGGCTCAGCGGCATGCGCGACCACATCGCGCTGGCCGCCATCCAGCTGGTGCCGCCTCAGGCGGAAGCCTGGCAGGTGCGGCGCAAGCAGGCCAAGACCAATCCGGACAAGGAACGCCGCCGGCTGGTGCGGCGGCTGGGCATCAGCGCGGAAGAAGCCGCGCAGCGCTTCCCGGACAGCGCCGCCCGCCGGCTAACCCTGCCCTTCCTCACCCTCAACAGCGCCAGCACCGGCCAGCGCTATCAGTTGCACATCGAACAACGCCCGGCCCCAGCCACCCACAGCGGCCGCTTCAACACCTTCGGCCTCAGCCCCGACGCCACCGTGCCGTGGTTCTAACCCTTTTTTTCCAGCCCCACCGCCAAGCCTTTTAAATCAATGGCTTGGCGCGGGGCGGGATAAAAGGGTTTTTATTGGGGAAAGCGATGCTTTCCCCGGCTGGCGCGGGTTTGCGGGAGAAAGGGTCTA # Right flank : GGCTACCCAACCCCTCCCCCCGCAATCCTTCCAATCACATTATTCTCAATTTGAATAACAATCTAATTTTCCAGATTTTTAACATATATGCAATCGTGCTAGATTTTGTTTTCCAAAATCAAGAAAGGGCCGGCCCAGCCGGCGTTCCACGATGGCATATCCACATTTCACTCTCTCCGCGCTGGCGCTGGCCTTGGCAGGGCAAGCCTTGCCGGTGCTGGCCAGCGACGGCAACACGCTGGACAGCGTCACTATCACCGGTTCGCGCATTGCGCGCGCTGGCAAGGAAGGCGCCACCGGAGTCACGGTGTTAACCGGGGCCGATATCGAAAAACAGGGTTATACCAATGTTTACGACGCGCTGAACAATCTGGCGCAGAACACCGGCTTCACCCAGGGCGCGGATTTCGGGAATACCTTCACCCCGGCCGCCAACGCCATCAGCCTGCGCGGACTGGGCCCCAACCATACGCTGACCTTGCTCAACGGCCGCCGCATCG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGGACAGGCAGCTTAGAAA # Alternate repeat : GTTCTCTGCCGGATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGACAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 40673-39984 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUKV01000004.1 Chromobacterium haemolyticum strain H5244 4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40672 28 100.0 32 ............................ AACCCGGCGCCGATGGACGCAGCCACTTCATG 40612 28 100.0 32 ............................ GTCAAGGCGTCGGCGACGCGGCGCGCGCGCCG 40552 28 100.0 33 ............................ CTCCAGCGCGCCGCTCAGCGCTTGCAGAGCCGC 40491 28 100.0 32 ............................ GTTCCGGCGCAATGAAACGCTGGGAGGCTATC 40431 28 100.0 32 ............................ TTTCCACGGACCCATGTCGTGGATTTGTTTTC 40371 28 100.0 32 ............................ GGTGGACAAGATGAAGTGCCAAACACAAAGTC 40311 28 100.0 32 ............................ GCAACGTGCTCATGACGGCCCCCGGGCCGGAG 40251 28 100.0 32 ............................ GTAACGAAAAACAATTTTCAGGTGCGCTACGT 40191 28 100.0 32 ............................ AAGCCTCAACCCTGAACGCGGTTTCATTGAAG 40131 28 100.0 32 ............................ TCTATGGCGCCGGTTTCGGCCATGTAGCTGGT 40071 28 100.0 32 ............................ TAGATCGCCTTCAAATCTTGCTCACGGCCCAG 40011 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : TCCAGCTCATTGGCGCTGAACAAGGGCGTGCCGCCCCCGCCGCAAAAACCCACCATCACCCCGGCCTTGGCCAATTCCCGCATTGCGGCCTGCGTCACTGAAGTGCCGGTGCCCAGCAGGATGCAAGTGGTGTTGGCGATGGGGATATTCCAGTACAGCGAAGCCTTGCCGGCATCGGTGACGTACTCCACCCGCCCGCCGTTGACCAGCACGCGGCAGTGCTGCAGATAGTAAAGATTGGCGCGCTTGGAATGCAGAATGGTCTTGAGATCGGACGGGGAAAAATCGGACATGGCCATACCTATGGGATGTGGCGCGATAACACATCTTGCCATGAGCATGAACGGAGGAACAGGCAGCGCGGTAAAACCCTTTTTTTCAGGCCCCTCATCAGCCCCAGTAAAAACAAGCACTTAGCCTTTGTCTGAAAATTTGGGTCAAACCCGGAAAAATCACCGCAGATGCCTACGCCATAAGGCGAGGGGGCGGTGTAAACTCTA # Right flank : ACCGAGGCGGGGTCATTCAAGCTGCTATGTATTTGAAGACGAGCACAGCAAGAATCGGGTCGTTCACAAGGGCGCGCCGCCATAGACTTCGAGCATTTCAAAGATACGAAGGAGAGCGGCATGGCTTGGCAACTGGAAACCCTGGACCCGGTTTTCGTCGAGCGGGCACGACACAAAGGAATTGATGCGCTCGGCCAAACCATACAACGGATGACGGCCGCTGGCGGCGAACCCTTCCGCGACGCGCTGCGCCGCGCCACTCCGGGAGAGGGGCTGATTCTGGCGAGCTACAGCCCATTCCACCAAGCCGGGCCATACCGCGAGTATGGTCCGGTTTTCCTGACGGCTGAATCACAGCCAGAACCTCTGCCCGAGCTGTCGTCGCTACTGCTCCGTGTCGGTGGGAATGCCTACCTTGGCGACAGCGTGGCGCTGCGCGCTTACGGCAAAGAACAGACCATGTTGGAAGCCACATTGCTACCAACACATGAGGTGGAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //