Array 1 120952-123055 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCVT02000003.1 Salmonella enterica subsp. enterica serovar Senftenberg strain HIY0145 NODE_3_length_307684_cov_32.324437, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 120952 29 100.0 32 ............................. GGCAGTGGCGGCGGCGTTTTTTTTGGGGTATG 121013 29 100.0 32 ............................. CATAACGGTTGTAGGTTCACAATAGCCCGTTG 121074 29 100.0 32 ............................. TATCACACTCTGTTACACCGTTATGCACAGAC 121135 29 100.0 32 ............................. AGTATCACCGGATTTTTCGTGCATATCGTGCA 121196 29 100.0 32 ............................. GAACCGAAATCATTTGTTGCTAATTTTAATTC 121257 29 100.0 32 ............................. TGGCAATTGAGCGATTGAACTCGACAGAACGT 121318 29 96.6 32 ............................T AATCCAGAATGCCGGGAGTTTTACGCATCCAC 121379 29 100.0 32 ............................. CGCGTGCCGTGATGCCGGCGTTAAAGCGGAGT 121440 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 121502 29 100.0 32 ............................. GCCTGGTTCTCTGAATCTGCAACGATTATCTG 121563 29 100.0 32 ............................. GAACTACTCAAGGGAGAAACCTTTTATGCCGA 121624 29 100.0 32 ............................. TTATCCAGATCTTTTGGTGTAACCTTTTTGAT 121685 29 100.0 32 ............................. ATCTGAGGCGTAGGTGTTCCACACTGCTTCGC 121746 29 100.0 32 ............................. GCGCTACCCCAAACCCGCAAGGGGTACGGTAT 121807 29 100.0 32 ............................. TCGGCGATTACGCGGTCAACGAAGAGACGATG 121868 29 100.0 32 ............................. CATTGAGTTGGTATACGAAAGGTGCAGATATG 121929 29 100.0 32 ............................. ACAAACAGCCGTGGCGATGTTAGTCGCGAAAC 121990 29 100.0 32 ............................. AAATGGGGGAGGTGCTAGAACTGGATGGCGCA 122051 29 100.0 32 ............................. GATGAATGAAATATTAACTGACGCCCGCATCA 122112 29 100.0 32 ............................. GCCCTTCGATGTTGTAACCTGATGTTGTAATG 122173 29 100.0 32 ............................. CGCATAAAAAACAAAGTGTTATGGCTATACCG 122234 29 100.0 32 ............................. CATGGCGGCGCGGCAGGCGCTCCACAGCTCAT 122295 29 100.0 32 ............................. GTTATAAATTCGGTTAGTGACGTCGTCTTTTA 122356 29 96.6 32 ...........................T. GCATGTTCTGAAGTGAAGCAAATGTTATAAAA 122417 29 100.0 33 ............................. GGAACAGCGCCGCATTTAAAGAGTTCGCCTGGC 122479 29 100.0 32 ............................. ACTCACAAATCTGTTTAAATACCGTTTCCGGG 122540 29 100.0 32 ............................. GGAATTGGAATGCGCAGATCCGATTACCAACG 122601 29 100.0 32 ............................. CGTATCGAACCGAGTGAGCAGAATTTGAGGCC 122662 29 100.0 32 ............................. AGGTAGGGAACCGAACGCCATCACATGAAAGT 122723 29 100.0 32 ............................. CGCGGATCAGGCTAACTCAATCAAATCGCCAG 122784 29 100.0 32 ............................. GTTATGCGCCGAAAATTGAAAGCGAATGGCTC 122845 29 100.0 32 ............................. ACAATAAGTAAAGAGCAATGGAGCGGCATCCA 122906 29 100.0 32 ............................. GTCAACGAGGGATTGAATTGGTGGTGTATTGG 122967 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 123028 28 96.6 0 .......................-..... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCTTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCTGATTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 139929-143417 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCVT02000003.1 Salmonella enterica subsp. enterica serovar Senftenberg strain HIY0145 NODE_3_length_307684_cov_32.324437, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 139929 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 139990 29 100.0 32 ............................. TGCCTAAAGATTTTGAGCGGACGGGAGCTGGC 140051 29 100.0 32 ............................. CACACTGAGGAAATGTGCTTCAGGCTGGCTTA 140112 29 100.0 32 ............................. CCCACTCGCGGAAACTGATGCTACAGGATATT 140173 29 100.0 32 ............................. CTGCTCGAAATTGTCGCCTATTGGGAAATTAT 140234 29 100.0 32 ............................. GCTAGGAATCCGCAGTGTCAGGATTTGGCTGA 140295 29 100.0 32 ............................. GAACAAAAAAACTAAACATTATTTTATGGTGA 140356 29 100.0 32 ............................. CGATATCAGACTTAGCCGTTCCCATTTCGATT 140417 29 100.0 32 ............................. TCAATGCCTGCAATTCTCGACATGCTGCATAA 140478 29 100.0 32 ............................. GTGATCGGCCTGTCCGGTACCCCTTTCAGTAA 140539 29 100.0 32 ............................. GAGATTCAGTCAGGTCGCCTTGACCCGCGCCA 140600 29 100.0 32 ............................. CTGGGGCGGCAACTCAAAGAGCTGGGGGAAAC 140661 29 100.0 32 ............................. AGTAACCATCCGCACTGATGGCATTAGCTACA 140722 29 100.0 32 ............................. CGAATTTTGCGCGTGATGGGCGCCCATGAGGT 140783 29 100.0 32 ............................. CGGACAGGTCGACAGCAAAAACTACCGGGCAA 140844 29 100.0 32 ............................. GCTGAATGGGTTTATTGCTTGGCAACGCTTTA 140905 29 100.0 32 ............................. TCAACGCCAGGATCGCAATTTTTACCGGATTG 140966 29 96.6 32 ...........................T. GCGCATGATCGTTGTGCGTGGGCGTAGTAAAT 141027 29 100.0 32 ............................. CATCGGGGAAGGGAGCACAGCTTTTTCTGCAA 141088 29 100.0 32 ............................. TGGACGCCGTCTATTCATATGCCGCGCTGGGC 141149 29 100.0 32 ............................. GCGGCAATCGCCGCCATTTGATTAGTAACCGC 141210 29 100.0 32 ............................. CAATGTGACACATTGCGAGAAGCGGGAATTTT 141271 29 100.0 32 ............................. TTCACGTCCGCCATCTGCGACACCTCCACCCA 141332 29 100.0 32 ............................. AGACCGAGACCGAGACCGGGCAGGGCGTAGCG 141393 29 100.0 32 ............................. CCCCGAGAGAAAATACCCGAAAGCGTTGTCGT 141454 29 100.0 32 ............................. GTGCGGTCGAGGTGGCGAGGTTGATAGCAGTA 141515 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCTGTCG 141576 29 100.0 32 ............................. GGCTGCAGAGATTTGGCTCCCCCCTCCCCTGT 141637 29 100.0 32 ............................. TCAGGGGAGAGGATTTTATAGCTGTTGAAATG 141698 29 100.0 32 ............................. CGGCTGTAATAAAGCCGCCCCGAGTCGCACCA 141759 29 100.0 32 ............................. ATGCCCGAGGGGGTCACGCTAAAAACGCTGAG 141820 29 100.0 32 ............................. GGTCGCACCAGCGGCGCCCGCACTTTATCCGG 141881 29 100.0 32 ............................. AGCTATATGTCTGACCGTGACGGGTCGGTTCG 141942 29 100.0 32 ............................. AGTTTGGCCGTGAGACAACGATGTTCCCGGAC 142003 29 96.6 32 ....C........................ TCAGCATCGTTGTCGATCTGGTCGGCAACCTC 142064 29 100.0 32 ............................. ACCGCAGCGTTCGCCCGCAGGGTAAGGAGTCC 142125 29 100.0 32 ............................. TTTACATTCCTGTCGTTGGGCATGAGGCCAGC 142186 29 100.0 32 ............................. GAATTTAACCATCGTATTTGCAGTTATTGTTT 142247 29 100.0 32 ............................. CTAATGCGAGGGATTCTTTACTAGCTGAAAAA 142308 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 142369 29 100.0 33 ............................. TACCGGGCGGCACCGGTGCAGGCGACAACCAAC 142431 29 100.0 32 ............................. ATGGAAGCCGATCTCTCCAGGCCCGTAGCCCA 142492 29 100.0 32 ............................. AGCGACTCAACATGCCGGTTATCGCTGAACAG 142553 29 96.6 32 ........T.................... GAGTTATAGGCGACTTCGTTCGGTTCGAAAAC 142614 29 100.0 32 ............................. CGTACCCCCGGCATTTTCTGGAACGTGGTCAT 142675 29 100.0 32 ............................. CAAGGCGAGTTCAGGCGGTGGCTTGAATCTCA 142736 26 82.8 13 ...................CA.....--- TGGCCGAGCGTGA Deletion [142759] 142778 29 100.0 32 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACG 142839 29 100.0 32 ............................. GGCAAAAACAGGCGTCTTTTAGGGGGTGGTCG 142900 29 96.6 32 ............................C GGTTTTTCTCTTGTCTTACGTATAAATCCAGA 142961 29 100.0 32 ............................. GCAAATATGTTGATCGGGATTCTGGCCGCACT 143022 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 143083 29 100.0 32 ............................. GGCAAAAACAGGCGTCTTTTAGGGGGTGGTCG 143144 29 96.6 32 ............................C GGTTTTTCTCTTGTCTTACGTATAAATCCAGA 143205 29 100.0 32 ............................. GCAAATATGTTGATCGGGATTCTGGCCGCACT 143266 29 100.0 32 ............................. TTGATCCGGGCATTTGAATATTGGGCTAAAGA 143327 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 143388 29 96.6 0 ............T................ | A [143415] ========== ====== ====== ====== ============================= ================================= ================== 58 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATATTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //