Array 1 1000036-996366 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019609.1 Vagococcus penaei strain CD276T chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1000035 36 100.0 30 .................................... TGCTTGCTATACAGTAGCCAAGTACCACTT 999969 36 100.0 30 .................................... CAAGCAAAAATTTTGTAGTGCTAAATGTCA 999903 36 100.0 31 .................................... CCTAGTTCTGTTGCGTTTAACCACTCCTTAC 999836 36 100.0 30 .................................... GTCGAGACTCGAAATGCTTAAAGCTAACAT 999770 36 100.0 30 .................................... ACGAATATAAATAGATCGACTGTTGAGTAC 999704 36 100.0 30 .................................... TATTGATCACATTATTCCTGTAAGCAAAGG 999638 36 100.0 30 .................................... AATTCGGTTACAGCAAGTTTTTGCTGAGAA 999572 36 100.0 30 .................................... ATTTAAACGCCATTCATAACCATCTCGTCT 999506 36 100.0 30 .................................... ATGGAGTGAAGCAATTCCCAGAGTTAGCTT 999440 36 100.0 30 .................................... TCGTTGGACTTGGGGACTGATTATCACGAT 999374 36 100.0 30 .................................... AGAAAAACAACGAGTTAAAGATGTTTTAAC 999308 36 100.0 30 .................................... AAAAGATATTTAAGTCAAAGAAGCGCAGCG 999242 36 100.0 30 .................................... TTGGAGAAACTACTATCGCTAAAGGAACGT 999176 36 100.0 30 .................................... GATACCGTCCCAAGCACCTTTTAAAACTCC 999110 36 100.0 30 .................................... ATCGATAGTGCCGTCCGCATTAATTTTTAA 999044 36 100.0 30 .................................... ATTTGCTTGTCCGCCAAGACTATGAGCAAA 998978 36 100.0 30 .................................... ACGACTAAGTGAGCAAATACAAACGCTAGA 998912 36 100.0 30 .................................... TGTCCTATGCGACTGGTGGTATGGTTATGT 998846 36 100.0 30 .................................... TTACTCTTTTAGCAAACGGTAATTTTAAAC 998780 36 100.0 30 .................................... AGAGTCTCAATCAGCCATGAACGTACTAGT 998714 36 100.0 30 .................................... GGAAGAGTTGGATTTATTCCAAGATTTTGA 998648 36 100.0 30 .................................... TAACTATTGTAGCGTCAAATTTGGCTAACC 998582 36 100.0 31 .................................... TATGCGTCGATTGAGATTAGCAGTTAATATA 998515 36 100.0 30 .................................... ACGCATTTAATGGTGAAGCTACAGGAGTTG 998449 36 100.0 30 .................................... ATGTGACCGAAAATGGTTACACGTTTAGTC 998383 36 100.0 30 .................................... AACAAACACTAAACAATATCCAGCTCAATT 998317 36 100.0 30 .................................... TGTTGTAACTCAATTTGAGCTGGTGCGTAC 998251 36 100.0 30 .................................... AGAGCATTTGGAATGGAAGCTGAGCAAGCA 998185 36 100.0 30 .................................... ATGTTGGCGAGGAAATAGTCGGCATTAACA 998119 36 100.0 31 .................................... TTAACAGGAGCTACTAGAGCGACTAAAACAG 998052 36 100.0 30 .................................... AAAGACGAGGAAACAGGTGCAGCAACTGGT 997986 36 100.0 30 .................................... ATCTATTTGAGTTATCAGTTAAAGAGAAGG 997920 36 100.0 30 .................................... TTGAGCGTAAAGCTAAGATGATATCTCCGT 997854 36 100.0 30 .................................... CGAATAAACTTCTAGACGAACAAAATACTA 997788 36 100.0 30 .................................... TACTCGTCTTCGATTTCCCACACTTTAGCT 997722 36 100.0 30 .................................... TCAATTCAAAAAAGGTGATGAACCTAGTTT 997656 36 100.0 31 .................................... AAGGTGACGTGTGGTTTAAACGTTTGCCCGA 997589 36 100.0 30 .................................... TGTGAGCTCTTAGGCACTCCTACACCATTT 997523 36 100.0 30 .................................... GATTAATTGTCTAATGTTGTCATATTCTTG 997457 36 100.0 30 .................................... TGTTAATCGAGCTAGTGAAGAAGCAACGCA 997391 36 100.0 30 .................................... GCTAGCTTGCGCTTTGCTTGTGAACACTTT 997325 36 100.0 31 .................................... GCATAAACTCTACGTTAGTGCTACGACATTT 997258 36 100.0 30 .................................... CAGTTGTAGTTTTTAATTGATTCTCATAGC 997192 36 100.0 30 .................................... TGCTACATAAGGTTTGTGTTTGCGACTTCC 997126 36 100.0 30 .................................... CAACGAGATTGCAAGCATGAGTCGAAATGT 997060 36 100.0 30 .................................... TAATCCAACCGCCTGGAGTTAAACCGACAT 996994 36 100.0 29 .................................... CGTTGGGGAGTAAGGATAGATGATAGGGA 996929 36 100.0 30 .................................... ACGTAAATTGACTAAAGAGACAGAAGGTGC 996863 36 100.0 30 .................................... TGTCTGCTCGAAAGTGCTAAATTCTGATTT 996797 36 100.0 30 .................................... CGCTCCGTACGCTGTCATACCACGTACACT 996731 36 100.0 30 .................................... TATTTTTCTACAAGTTTCTTCTGGGCATCC 996665 36 100.0 30 .................................... AAACAATAACGTCTCAATCATTGCTGACAA 996599 36 100.0 30 .................................... TTCTCGCCAATCTTCTAATCCTTCTATTTC 996533 36 100.0 30 .................................... TAGCAAAGAAACAATCGAAACTATCAATAT 996467 36 100.0 30 .................................... CATCTTTTTAGGCTTTCTAATATCTGCGTC 996401 35 80.6 0 .......................T.TA..T-..G.T | T [996388] ========== ====== ====== ====== ==================================== =============================== ================== 56 36 99.7 30 GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Left flank : AGACACAGATTGAAGACTTGTCACTGGGGATTACGCGCCTAATTGAAGTAGAGTTACTTAATCATGAGTTAGATTTAGAACTGGACGATATTACTTTTTTAGAACTATTAAAAATCTTAGGCGTTAAGATTGAAACAAAAACAGACACACTATTTGAAAAAATGTTAGAAATTATTCAGGTTTTTAAGTACCTGTCAAAGAAAAAATTCATTGTTTTTATTAATGTCTGTTCGTATTTTAATCAAGAAGAATTAATTAAAATAAGTGAATATATTTCGTTATTTGATAGCGATGTTTTGTTTTTGGAACACTATAAAATTGAAGGCGTTAATCAATTTATTATCGACAAAGACTATTATGTTACAAGTGAAACTATGTTATAATAAACTTAAAGACTGTTCCTTGAAAAAAGAATAATCTACTAACTAAATTAGCATTCAAAAGAGACATCTTGCTATGGATGAATGGCGCGATTACGGAACCGAGAAATTTTCTGCGAG # Right flank : GATGAATGTGAGATTATTTTCACCTTCATTATCTTTTTTTGTTTATTTGTCTCATGCGGTTTGTTTTTCTTTATTAATTTTTTATTTCTCTGAATCTGATATCATTAAAAACAGTTCCTACTAGTTAAAGGGATAGAAAATGTAGTTCCTATAATAATTATGCTGTTTTTATTTTTAATTCATAATACTTTTTTATATGTTTAGTCATAACTTGTTGCTCTTTTTAGCTTTGACCTTTGTGGATAATTAAATTAAGACATAGTCTGTGTGTAAATAATTAAAAAAGGATTGATGAATCGAAAATTGATTCATCAATCCTTTAAATTATAAGTTCTTTTTTTATATATTATCTTCGCCACTGCTGTTTGCCATGTTGTTGCCTTGGTCTTGTACCGTCATAACGACAATTTTTTTGCCTGTTTTGACATGTGTTAGATTCTGACATTTGTGGTCTGCTATTGGGTTCAGAGTTAGTGTCTTGAAGTGGACAATCAGTTGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGCTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 1801260-1803349 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019609.1 Vagococcus penaei strain CD276T chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================== ================== 1801260 36 100.0 30 .................................... TATATCACAAGATTTTAAAAAAATAGTTGT 1801326 36 100.0 31 .................................... TAGATAGTCGCATAGTTTTAGATGATGATTA 1801393 36 100.0 31 .................................... CAAAATAGTTATCCATTATTTTTTATCAAGA 1801460 36 100.0 30 .................................... GTTTGCATTATCGACGAAGCACCACTCAAT 1801526 36 100.0 30 .................................... ATCACTTCTACCCAACTTTTGCCGTCCCAT 1801592 36 100.0 30 .................................... ACTGATTTACCACTACCACAACCTGACACG 1801658 36 100.0 31 .................................... CAAAAATCAGTTAGACGACAGAAAAGGTTGT 1801725 36 100.0 31 .................................... CAAAATAGTTATCCATTATTTTTTATCAAGA 1801792 36 100.0 30 .................................... GTTTGCATTATCGACGAAGCACCACTCAAT 1801858 36 100.0 30 .................................... ATCACTTCTACCCAACTTTTGCCGTCCCAT 1801924 36 100.0 30 .................................... CTACGGCGGTGCAATCGGCACGTACGGGCG 1801990 36 100.0 30 .................................... AAAATTATCTCAATTAAAAAATGTTTTGGC 1802056 36 100.0 30 .................................... AACATGTTTATCGTTTATGATGACACCATT 1802122 36 100.0 30 .................................... TAAAGTTGTTATCCTTCTGCTCTTCGCTAC 1802188 36 100.0 30 .................................... GTTTTTTAAGACAATCCTATCCAGAGCTGT 1802254 36 100.0 30 .................................... AAAATTATCTCAATTAAAAAATGTTTTGGC 1802320 36 100.0 30 .................................... AGTGAAGCTGATACTTGTTTTCGTTCATCA 1802386 36 100.0 30 .................................... ATCTCAACGAGGAACGTATTGGGCTGTTCG 1802452 36 100.0 30 .................................... ATTCCGATTGAAATTGTTGACGGAATTACA 1802518 36 100.0 30 .................................... CAGAAGGTGAGCGTGTTCTTTTCATCACTG 1802584 36 100.0 30 .................................... CAATACCTTTTATTCCGCTTGTAAATCCAT 1802650 36 100.0 30 .................................... TAAAATTTTTTCTTTGATTAAGACTTTTTC 1802716 36 100.0 30 .................................... TTGGTTTTTTTGACAAACGTCACATCGTCT 1802782 36 100.0 30 .................................... TTCTACACTTTTAAAAAAAGAGCAAACATG 1802848 36 100.0 30 .................................... TTTTCTTTTGGCTCTGGAATAAGGAGTTTG 1802914 36 100.0 30 .................................... TTCTACACTTTTAAAAAAAGAGCAAACATG 1802980 36 100.0 30 .................................... TATGCCTCCTGTTTTTTAGAAATTCGGTAA 1803046 36 100.0 34 .................................... AAACGTCAAAGCGCGGGTAATAAATTAGGTACAG 1803116 36 100.0 30 .................................... TAAAAGTATTGAAACCATTTATTGATAAAG 1803182 36 100.0 30 .................................... TGATTAATTTTTCTCAAAATGACAATAGCA 1803248 36 100.0 30 .................................... CAACTCATTTACTGCCCAGCCACGTCCACG 1803314 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================== ================== 32 36 100.0 30 GTTTTTGTACTCTTAAAGATTTAGTAACGGTAAAAC # Left flank : ACAACTAAACAAACATGGCTTTTTATCAGTCAACCAACAGCTTTTTTACGCCAGGATTTACTGGCAAAATTATTACTAAACCTGACTAAAGTCAACCAAAAAACAGAATTACTGACAGTCTTTATTTTGAGTGATTCGTATTGTCCCTTAAATTATAGGCGTAATGATATTGAAGCGACAACATTGATTTATAAAGAGTATCAGCAATTACCAGATTTTACAACATTAAGGGCGTCTATAGAACGTCACTATCCAGATACCTTGACGTTAACAGATGATGAACTAATTACTAGTTTGTATCGCTTAATGCCGTATATTGGTGTGATGAACTCAGAACAAGTTTATTTGAAAGACCAAGAATTACTTCTATTAAATGTCTTACATAAACTATTAGGTATTGACATAATAGTTAAGAGCCCAAAAAAAGTATTGACTAAACTAGAAGAAGCGTATTTAATGTAGGTAGGTATAAAAATTTTATTTGGAGACGTTCATTTGAG # Right flank : CATTAAAGAATTGTTAGTTGTGCAACTTAACATTAACGCATTTTTGCATTGAAATCACACTTAAAAAGCTCTAGTCACTACCAAATACAACATAAGGTAGTAGCTAGAGCTTTTTTATAGAGTCATTAAATCTAAACCAGTTTAATCATCTAAACCAATCAAGTAATCATCGTTTTTCATGGCTTCAACTGTACCAAGTAGGTAGCCGTTACCAACTTGCGAGAAGAAGTCATGGTTACTTGTACCTGTCGATAAACCGTTCATAACAATCGGATTAACATCCTCGGATGTATCTGGGAATAATGGATCCATACCTAAATTCATTAGGGCTTTATTGGCATTATAACGTAAGAAGGTTTTTACTTCTTCAGTCCAACCTAATTTATCATAAAGTAATTCAGTATATAATTCTTCATTTTCATAGAGTTGGAAAAGTAAGTCATACATCCAATCTTTTAATTCTTGTTGCTCATTTTCAGGTAATTCATTAAAGCCTAATT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTTAAAGATTTAGTAACGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //