Array 1 16467-17288 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYCZ01000021.1 Salmonella enterica subsp. enterica serovar Muenster str. 660 SEER0660_78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16467 29 100.0 32 ............................. CAGCTTTAGCATCGGTCGACAGCCCATCTGGC 16528 29 100.0 32 ............................. CGTCCTTTACATCCCAGACCACACTAACGTCG 16589 29 100.0 32 ............................. CACTCGCTGGAGCTGGTTGTCGCTATCAGCAA 16650 29 100.0 32 ............................. ATGAATCTGTAATTCGTTATAGCTCATCATTG 16711 29 100.0 32 ............................. ATACGCTCAACCTAGCTCTTACTCAACTACAT 16772 29 100.0 32 ............................. GGGCGGGTAACAGCGTGCTTGGTTCTGGTAAC 16833 29 100.0 32 ............................. AGAAAAACCGCTTTGTAATTACTGGTCATGTT 16894 29 100.0 32 ............................. CGTGTCAGCCAAGGTGCAACGCTACTACGCAC 16955 29 100.0 32 ............................. GAAGGTGTTTTTTATTCAAAAGATAGGATACC 17016 29 100.0 32 ............................. CCAGTTTCTAACGATATCGTCCACCAGCTTCG 17077 29 100.0 31 ............................. TATGACTAATGCACAGTTAAAACGGGTATGG 17137 29 100.0 33 ............................. CAAAATGTGTTGTTATGATGGTAGCCTTCAGAC 17199 29 100.0 32 ............................. TGTTCCGATGCAGCGCTTACAACGATGGGGAG 17260 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TCAGCGCCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 105230-103615 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYCZ01000081.1 Salmonella enterica subsp. enterica serovar Muenster str. 660 SEER0660_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 105229 29 100.0 32 ............................. GGCATGTCGTGGTTCAGGATGAGAAAATCCCC 105168 29 100.0 32 ............................. ATATTCAGGAGCGTATCGTGGCCGAGATCGCA 105107 29 100.0 32 ............................. CGGCCCCGTATAAATCTCGTGGCGCACAAATG 105046 29 100.0 32 ............................. CGCATTCAAATGCCGCGGCATGACCAGCAGCA 104985 29 100.0 32 ............................. AATTGGTGTGGCCTGGCTGAAATGTCGGGCGC 104924 29 100.0 32 ............................. GACGATTTTAACGCCGTATCCCGTTCTTATAA 104863 29 100.0 32 ............................. CCGGCCGCGATCGCGTCTTCCAGGGTGATGAC 104802 29 100.0 32 ............................. ACCCCGCATAGTCCTTGTCGTATAAATATTGA 104741 29 100.0 32 ............................. CCCTGGTAGAACTTTATACGCAAGCGCTTATG 104680 29 100.0 32 ............................. TCTCTACACAGGAGCACAGGACATGAATAGCA 104619 29 100.0 32 ............................. TAGCCGTCATTACAGAATTAATTACACGTGAA 104558 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 104497 29 100.0 32 ............................. GTCGGGCTATGCGTCTACAGGCGGCCTCTGGC 104436 29 100.0 32 ............................. ATGCGGCGAACTTTGTCCACCAGTTCGTTACC 104375 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 104314 29 100.0 33 ............................. ATATGCGGAATCACCAACAACACGCGCGCCCTC 104252 29 100.0 32 ............................. GCATACCGCATTTTCAATAATTTCAGCACCGT 104191 29 100.0 32 ............................. ATCGCTTCCAGCCGTTCTTTCTCCTGCATCAG 104130 29 100.0 32 ............................. AGCGTCTTTCTGCTCTTTCTTGGAGGCTATTT 104069 29 100.0 32 ............................. CCGCTGGCGGTGAATACCATGCGGCGTATCGC 104008 29 100.0 32 ............................. CATGGATTTGCCCCAACTCATGGCGGCTGGCT 103947 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 103886 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 103825 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 103764 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 103703 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 103642 28 82.8 0 A.....................-.C..GT | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATCGGGCCGCCGATTTTGT # Right flank : TTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTGTTCTTCTCAGCGTCACTCATTCGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9465-11565 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYCZ01000087.1 Salmonella enterica subsp. enterica serovar Muenster str. 660 SEER0660_96, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9465 29 100.0 32 ............................. CTAACCCGCCATTACGGCGGGTTTCTTACAGG 9526 29 100.0 32 ............................. CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 9587 29 100.0 32 ............................. TAATTTGCGGAGTTCGCGTAACTCACACAATG 9648 29 100.0 32 ............................. GTAGAGTGTCCAGTTTGTGAGCATGTTGGCTG 9709 29 100.0 32 ............................. CTCTTTTCGTGCGTCGCCCAGCGTTTGTGGTA 9770 29 100.0 32 ............................. ACCAGGTTATTTATACAAACCTGCTGGCTGAT 9831 29 100.0 32 ............................. GTTCCCGAATGAGGGTGAACGAAGTCACTCTT 9892 29 100.0 32 ............................. ATGAGCTTATCCGCGTGATCGGATTCATCAGC 9953 29 100.0 32 ............................. TCCATTGGTGGTTCACTGTGTTGACCAGGGCC 10014 29 100.0 32 ............................. CGACGGCCCGTTTATATAAGGCGGCTGGCTAT 10075 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 10136 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 10197 29 100.0 32 ............................. GTACACGCATGAAACCTATCACCCTGTTTAAT 10258 29 100.0 32 ............................. ATCAATATTAAACTCATGACCATGAGCAGTCG 10319 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 10380 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 10441 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 10502 29 96.6 32 ............................T GAGCCAGACTGAATTTTATGAAGAAATAGGTA 10563 29 100.0 32 ............................. GATTTTCGATAACGCCGCTTCAGCTCACTGGT 10624 29 100.0 32 ............................. AGCAAAAAACGTGGCCGCACGAACGCGGCCAG 10685 29 100.0 32 ............................. TTTGGTGATGCGATCGCCCCTTGTTCAATGAT 10746 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 10807 29 100.0 32 ............................. CGCTGTGCGGTAATTACCTTTGAATTACGCAT 10868 29 100.0 32 ............................. CCAACGGTTTCCGTTGGCTTTTCACCTTCAGC 10929 29 100.0 31 ............................. CGCCCCTACAATACATCCTGATCAACAACCG 10989 29 100.0 32 ............................. TTCTGGCGGCAGAGATAGTTAAAATAGTTGCA 11050 29 96.6 32 ............................A AAAAACGGGCGCTGCGGGTCATTTTCGAAAGC 11111 29 100.0 32 ............................. GGCGGCAATATCCATCACTCAGCACCAGGGAA 11172 29 100.0 32 ............................. ATTTAATTGCGTCATAATATTAATTCCTGTAT 11233 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAATAATT 11294 29 96.6 32 .....T....................... CGTTACAGCCAGTTCATGGAAAGTTTCAGGCA 11355 29 100.0 32 ............................. ATCCCAAAACATCTTTCCCTGGTTCCTCTCAG 11416 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 11477 29 96.6 32 ............T................ TACCAACAATTCCGCGTTACGCCAACGGTAAC 11538 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACAGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATATGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGATGACCCGTCCTGAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //