Array 1 2779227-2779626 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013008.1 Arthrospira platensis YZ chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 2779227 35 97.1 40 ....T.............................. GCTTATGTACAAGCATCGGCTAATTATAGTCCGTGCTTTG 2779302 35 100.0 37 ................................... CCATTGTCGATTCCGACAAAAAACCTTGTTCTTATGA 2779374 35 100.0 35 ................................... TAGAAAAGGTCGGCGATCCGACCAAAAAATACTGC 2779444 35 97.1 37 ..................G................ GCTGGTCAATCGTCTGTCAATACCAGCGGTAATGTTG 2779516 35 100.0 41 ................................... CTTGAACAATTACTGCTTGTTCAGAAGCGCAAATCATACCA 2779592 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 6 35 99.0 38 GTTTCCATACGTTTAACTTTCAAAGAAGTTTAAAG # Left flank : AATCGGTGCAAAATCTTTGGGTTAAGACTCTTTTGGAAGCTTATTGCAAAGACCTTGAAATAGGTGCAATTGGGTATGCTGATGGGGTTGAGACGGTCTTACTAAACACCCCAGCGACACAGTGGGAGAGTATTTTAACAACCTTGAAAGGGCTGAACCAATCACTTTGGGGCAGACAGAAAATTAAACAGTTATTGGAGCGACGGGAGAAACTTAAACAATCTCCTCTGGAGGAACAGGATTTTGATGAAATTTTTCGAGACTATCAAGAAAAAATAGAAAAGTATATTGCCCAACGCAATCGCCGCTCCTATTGAAAAGCGATTGAATTTTTACAAAACCTGAAATCCATTTGCGATCGCACAGGTCAGCAGTCTCTTTGGGATTGTTATATTGAAGTTTTGCGATCGCGTTATGCCAATCTCAAAACTCTATGGCTTGAAATTGATGCTTCAGATTTACAGTTAAAATAAATCATTTTCATTGATTTCAGTCAACTC # Right flank : GAGTGCCGAGTTGAAACCCTTGCTCTGACTGTACTCTAGCACTCAAATTTGTGGGGGTCAAGCAAACACCCAAATTATTGAGACATATTTGCAATAAGACCCCAGAAAAAATGGCTCAAACCTTTACTCTGACTGAGCTTTGTGTGGGTCAACGAAATCATCAGGGTTTCAGCGATTCTTCAACCCCCACAATGATATTTACCTTACATCTTTGTTAGCATGGGCCGATAGACTTCCCGCTCTCCCATCAGGCAAGAAATATACTCCCAAACCTGCAACTCCAAACACCGATAATAACTAACCTTGTAACCCGTATGGGGATGAGTGGTTTTCAAAGAAAGCTTATCGTGCCAATGCTTCAGATATTTCTTGAGAGCATCGGAATAAATATAAACCCCACCCCGTTCGTCACTTGGGGTAAAATCTTCCGGGGTAAAAATTCCCGAATTCACCAGATAGATAACGAGAGAATCCACCACCGGGGCGCGAAACTCCTCAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACGTTTAACTTTCAAAGAAGTTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 2785779-2784789 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013008.1 Arthrospira platensis YZ chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 2785778 35 100.0 38 ................................... ATCAATGATGGTTACTCCTGGGTTTCCGCCAGGCAAGA 2785705 35 100.0 38 ................................... TGTCCATTCCTTGGGCACTGGTTTCTGCCCTTGCTCTG 2785632 35 100.0 41 ................................... GCCAGTAGTTTGGATCGCTATGGCAGTAGTTACCAGTACTA 2785556 35 100.0 39 ................................... TACGGTATTTTCTAGCATCTGTTTAGATACTGTAAAGTT 2785482 35 100.0 37 ................................... CAACCTTTATCGCTGGTCCAGGCGGAAGGTGGAGAAT 2785410 35 100.0 41 ................................... CGGACTATAGTTAGCCGATGCCATCTCCACAGGAGAGAAAA 2785334 35 100.0 38 ................................... CTATTTATTTCGTAAATTTTAGCGGGGCAGACCCCGCT 2785261 35 100.0 34 ................................... CATGGGCTATAATTAGCCTTAGCCCATACGGTTA 2785192 35 100.0 42 ................................... TAAAAGCATCTTTCGCAGAGAGATAACTATTGTAGCTTCCCA 2785115 35 100.0 35 ................................... GGGTCATTTCCAAGCGATGCGACGATGATGTCATC 2785045 35 100.0 43 ................................... GATCAATGTTGTTAAAACAAAGTTCCGCAAGTTGGCTATCAGT 2784967 35 100.0 39 ................................... CTCGTAAACTTTTGCGGGGCATGACCCACTTCCCCGCAT 2784893 35 94.3 34 .........................A.......C. CCCACCAACCTCCCACTCAAAGGAGGAGGCCTAA 2784824 35 74.3 0 T.........A.T........C...C...A..GCA | A [2784816] ========== ====== ====== ====== =================================== =========================================== ================== 14 35 97.8 38 CTTTAGACTTCTCTGAAAGTTAAACGTATGGAAAC # Left flank : TTTATTGATTCATGGAGCAAAGGGAATCTCTAAACAACGGATGGAAGATTTGCGCTCTGAAGATTTAGAAAATCCAAGGAATCAGAAGATTAAAGATACGGTTCGTGTTTCCTGTTTACCCACAGATATTATAGTACAAATGAGCCAAATTTATCGCCTTGTTGTTGAGTTGATGCCACTTTCTGGCTTTCAAAATGTACAAGATTATCTAACGGTGAATCAGGAAACGGGCGATCCGATTTAACCTTATTATCTTTACTCGGAATTTAAGGAGTGGGTTGGGCAAATTTTGGATCGCGAGCAATAATCTTGTGGGGGTCGGGCGATCGCTGAAACCCTTATTCTTTCGTTGAAACCCCCGGAAAGCCTTCTCTGTCTAAGTTTCAGCTATTCTTATTGGGGTATTATTGCAAATATATCTCAATAATTTGGGTGTTTGCTTGACCCCCACAAAATTGAGTGCTAGAGTACAGTCAGAGCAAGGGTTTCAACCCGGCACT # Right flank : AATAACTTGAAAAAATACCCTCAACTTTTGGGTTATTTTGTTAGAATTAAATTCAGTTTCTTTCCATACGTTAGACTTGCTTAGAAGTCAAAGCGTTGCTGTTCTCAAATGGGTTTTAAACCACTCGATATTCAGCTTTGGGAACGAGCTTTTGCAAAATGCGCTGATGATTAACCGCATCATTTTGTGAACGAAAACGACCCACAACCAAACACTGATTATTAGTAACAGATTCTCGTTCTGAGGCGTTTGGCGATCGCACCAAACACCAGGGATGCAATCTTTCAAAAGCTGTCATTGCTCGTTCTCCTTACGCTTTGACCCCACGATAAGCCGAAGAATTTGCACAAAACAGGGCAGGCAACCCTTGACAAAATCAATTATTTGTGCAGCTCAACTGTTCTTTGAATTCAACAGGCAGATCGTCCCATCGTTCCCAGAGCAAATCCATCAGCGCCAAATGTCGAAGATCGGTTTGAGTCGGGCGGCGGTAACGTTTA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGACTTCTCTGAAAGTTAAACGTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 3 3439706-3438275 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013008.1 Arthrospira platensis YZ chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 3439705 37 100.0 42 ..................................... TCAGCCATCACCGGAAAGCCCTCGTCATCTGGCATCGCTTTA 3439626 37 100.0 36 ..................................... CCCGGAGGGGGAGCCCATACTGAACTACCAATTTAG 3439553 37 100.0 37 ..................................... CTTTGACCCGGAGAAGTCTTACCATATCGTCTTCAGG 3439479 37 100.0 38 ..................................... ACGAAGAGGGAGAACGGATGGGACTCCGACATCCGTGG 3439404 37 100.0 44 ..................................... TCGACATCGGTATCTAAATGCCCATCAAACACTCTGCCTATCAA 3439323 37 100.0 41 ..................................... TTCCCGAAAATGATGCTGAAACGCTTCTGGCGTTTGCCAGG 3439245 37 100.0 46 ..................................... GCGCGTAACGTCTTAGCACCGAAGAGCCCATCGATTTTACCCGGCG 3439162 37 100.0 41 ..................................... TCTATCTTCCGTTTGTCTTCTACATACTCCCACCCCACCCA 3439084 37 100.0 35 ..................................... TAAAAAGCGTGTTGTGGCTGCATCACAGGGAACCA 3439012 37 100.0 40 ..................................... TCCAAAATAGAGAGGCCGCTCTCTCTTGGTTGGAAAATAT 3438935 37 100.0 42 ..................................... GTTTCGCTTTTTTTGGGGCTTGCGTTTTTGCTTTGGTTTGGT 3438856 37 100.0 40 ..................................... CACATACCCCGAGGGGCGTAGATTTGCCACGACAGACCTA 3438779 37 100.0 44 ..................................... TACTGTTAATTCTAATTTTTCTTTTAAAAAGCTTACTATACTGT 3438698 37 100.0 36 ..................................... TTTTATATAGATTAAAGGAGGTTTATGCCATTTTCA 3438625 37 100.0 41 ..................................... TTTGAAGCCCATTTTATTTTCCTCAAATTACAACAATAAAA 3438547 37 100.0 42 ..................................... ATTTTCTAAATCCTGAACCCAGTATGTTCCGCCTCCTACGGG 3438468 37 100.0 45 ..................................... ATAATATTATTTGATGACCAGGGTACGTCTCAGGTCGTTAGGGGA 3438386 37 89.2 38 .................AAG.A............... GGCTAGGGAATGCCGATCGCATTTTGTGATTTTCCAAA 3438311 37 83.8 0 ...AT................AA.......G.....G | ========== ====== ====== ====== ===================================== ============================================== ================== 19 37 98.6 40 GTCCAACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : CCTGGAGGAAAAAATTCTGGAGGACTTATTGAATAAGCGGTGGCTGAAGGTTTTGAATTTAGAAAAGGATAGTCTGCGGGCTTATCCCCTCAATCCCTCGACTAAAGCTCAGGTTAAGGTCTACGGGGGACCGCTTCCTTACGAACCACCAGACTTTCTCATTTTGTAAGGGTGGCGATCGTCCCAATTTTGATGGCTTTGGGGCTGAAATGCCCTTGAGTCAATGATTTTCAGCAATGTAAAGTTATATTGCAGTTTTTAATAATATGGCGCGACGAGGATACAACAGAAACCTGATATAAACTTGAGCTAAAAAAAGAGAAATTTGTTTTTTGGGGGGTTGACAGTCTCGCACAACTCCTGATAATATAAAAACATCGCAAAACAAACGAATTTACTCGCGCCAAACAAGCCTGTAAAGTTTTGTTAAGCACCTTCTACGTGTTCTCGCGCAAACGCACCTTGAAAACCGCATACTGTAAGGTTTCCAAAGGTATAGG # Right flank : GCGAGAAAACCGAGTCTTAAAAAGCCCCCAGGGTGAAGTCTTGTTAATGAGGGGGTAGGGTAGGGAAACAGTGTCAGTAGAAGATATTTCCCATCAATTAACCTTCCACTTCTCCATGGGTTTGGTGGGGGGAATTTCCTAACTTCACCTGCTTACCAATGAGACTTAAAAAAGTCGAGCCAAAATGCTGAATTTCCAAAAAGTTCGCATAAGCCGGGGCGGGTTTATAAATCCTAAAACTCTTCATAATTCCTAGAGTTGCCGCGCTTTCCAGGGGACCCACAAAACTGCTATCTCGGTCTAAAAAATAAGGTTGTTTGACCCAATGTTCCATCTGGTTATTGTTGAGAAAATAACAGCCAGCGTGGGGGTTTAAACTGCGATTAAATTGAATGGGTTGCTCCATCACCTTACCCACCAATTGGGGGCGATCGCGTATATTTTGAAACTTCGCCGTCACATGGGGTAATAAATCCCCATCAACATAGGCTTTATTAATA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 4 4047231-4044581 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013008.1 Arthrospira platensis YZ chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 4047230 37 100.0 39 ..................................... GTCCGGTGGGCTTCATAGTAGCTGTAATTTGGACGGAAG 4047154 37 100.0 44 ..................................... TTCGCGCGATTAAAGCACGTAATCAAGACATTTGATTTGCCACA 4047073 37 100.0 44 ..................................... TGTTGGGCTCGTGGCAGCGCAATGCTGCGCTCACACCGCCAGAT 4046992 37 100.0 44 ..................................... CGCCCATCCCACGAGGCAATCCTTACCTTGATATCTTTTCTGAA 4046911 37 100.0 41 ..................................... TTAGAATCAAATAAGGAAAATAAAGAAATATTAGTTTTAAT 4046833 37 100.0 46 ..................................... CCAGGCTTTGAGGATAGGGTAGATATCCCGCAGACTCATCACCCCG 4046750 37 100.0 44 ..................................... TTTGAAACCTTCCTTTTCTAGCAACTCGACAGAAGCGATAACTA 4046669 37 100.0 40 ..................................... ACTCTTTTATTCTATGTAGTTCCGTGTAGTTGTAGTATAA 4046592 37 100.0 48 ..................................... CTCCTGGCGTTAATGCATTTTTCGACTACGGAATCGAAATCCTGCAAC 4046507 37 97.3 48 ......................T.............. CTTAATCTTGTTCATTGCTTAGTTTCCGAGATAATAATCAGCGTCCTC 4046422 37 100.0 38 ..................................... CTATGAACGGGACCTCCACCTCCACGGATAAGGAGTTT 4046347 37 100.0 45 ..................................... GTAACTTGTTTTCCTTCTACGGTTGTCACTAGAAAAGCAGATCTG 4046265 37 100.0 41 ..................................... GTTCGTCTTGCAGGATAGCATCTGCTCGTTGATTCAGTTCA 4046187 37 100.0 43 ..................................... AGTCGTAGGTACTGGAACCGCATTCACCGCTGACTTTGCTATT 4046107 37 100.0 48 ..................................... TTGTGAATTTTCTACTGTTTCTCCGTTGGCACTTATGTCCACATAAGT 4046022 37 100.0 40 ..................................... CGGCCCGTAGGTATACTACCAGTTCGAAGGTAGTCCTGAA 4045945 37 100.0 43 ..................................... ATGGGCATTGTCGTTTTACTACAATCCTCCCTTTTTACTTTTT 4045865 37 100.0 41 ..................................... CAGACATGATTTGTATGGATAAATACTCCCCCTTCTGGGTG 4045787 37 100.0 43 ..................................... TTAGCTGTCTTTGGTGTTCATTCATCTGGAAATCCTCAGCAGA 4045707 37 100.0 41 ..................................... TAATTCAGGGTGTTACACCAAATAGGTGTATCCGCTTCCCA 4045629 37 100.0 41 ..................................... TTATAATATTTTTAAAGAACAAGAACCAAAACAAGAACAAG 4045551 37 100.0 39 ..................................... TTCGAACAATAGCAGTTCTGAGATTATCAAAATAATCTT 4045475 37 100.0 44 ..................................... TTAAATGACCTCATAGAAGGTATTTGTAAATTATTTCCTTTTAT 4045394 37 100.0 36 ..................................... TTCTGACCGGGGAGAAGCCCTCCCCTTACCGAGTTT 4045321 37 100.0 42 ..................................... TATGCTTTTGATTCCGCTTCTTTTATCTCTTGTCTAGTGGCG 4045242 37 100.0 41 ..................................... AGTCCATATTTTAAAGTACCCGGTTACCTTTTTATTATTTA 4045164 37 100.0 45 ..................................... ATAATCCACCTTCCGATTTGACCGTTATTCTTTACAGCCAACGGA 4045082 37 100.0 42 ..................................... GAACCTGGGGCATATTACCCTCTTGTCCTGCAGAGAAAAGCC 4045003 37 100.0 39 ..................................... TTTAACCAGACTACATCACAGTCTGTTAGCGCTTCCTCG 4044927 37 89.2 43 .................AAG...C............. GATCGCAATTCTCTAGTGCCCTTTTCCTGTGATACCCGCTGAG 4044847 37 89.2 39 .................AAG...C............. TTATCGAATGTCGTCTTAGAGTGCTTTTTTGGATTTGAA 4044771 37 89.2 41 .................AAG...C............. AGGGGGAAGACTCCCCACTGGTAAGCGCCATATTCTCCCAG 4044693 37 89.2 39 .................AAG...C............. GAAATCCGAGCGATTCCACTGGGTTGGTTGTGTTACTGT 4044617 37 86.5 0 .................AAG...C............G | ========== ====== ====== ====== ===================================== ================================================ ================== 34 37 98.3 42 GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : CAGGTGCATTGGACTCAGTTCACCGCTGACGGACAATCTGGGGATGCCAAAATGTTGACAATTGCTGAAATTTCTTGGGGTGGACTTTGGTTATCTTCCAGGGTTAGGTGGGCTTGAAGGTCTCTCCCCTGCCCCAGGGAATGAGTCGGTGGGTTGATTCTCATAATTATTGGGGCTTTTTAAGGCGATCGACCCTCCCTAATGGATGGATTCCTTTCTGGGTGAGTGTTTGGGACTTTGTAAAGTTATATGACAGATTCTCATAACCTCGCGCGACTGGCAATCCTGGGCTAGTTCAGGTAAATTTGAGCTAGAAAAAGAAAAGTTTTTGTTTTTGGGGGTTGACAGTCTGGCACTATGGCTGATAATATATATCCAGCGAAAACAAAGGAATTTGCTCCCCAAAAAAAGGGCTGTAAAGTTTTGTTAAGCACCTTCTACGTGCTCTCGCGCGATCGTACCTTGAAAACCGCATACTGTAAGGTTTCCAAAGGTATAGG # Right flank : CTAACTGGTGTGTTGATTTTCTCAGGGTCGAAGTTGATAGAGGTCCGCCAGTGGTCAATGGGGTAGTTAATAGCCATCACCTTTTGCGACCCTAGAGTTAGGGATTCATCCCCAAATTGGGTGGGGTATGATGGTGCAAAATCCGATTAATAATCCCACTGGTAGAAGTAGGCATTTCCACGGCAATTAGGACAATCTTGCCGCCATAGCTTTGAACCGTGGGCGCTTCCGGTAGCGTGTCAATGGTGTAATCACCACCCTTAACATAGATATCAGGTTGTAACTGTTCAATAATCGCCCTAGCAGTGCTTTCTGGAAAAATCACCACTGCATCTACGGGTTTTAAGTGGCTGAGAACTTCGGCTCGCTGTAATTCTGGTATAATAGGACGGGGAGGATATCCAGCCGAGTGGGGTTTAATCAGGCGAACAGATCGATCGCTATTGAGACCGACCACCAGCGATCGCCCTAAACTTTTGGCTTGGGTCAGGTAGCGAATA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 5 4117964-4121184 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013008.1 Arthrospira platensis YZ chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================== ================== 4117964 37 100.0 45 ..................................... GGACGGAAGTGGGGTACTAAGATTTCTCCAGGGTTCAATTTTGCG 4118046 37 100.0 38 ..................................... AAATGGGATTACAAAAGACCCGATTCAATCAGTCTCGA 4118121 37 100.0 43 ..................................... ACCGAGCGAGGTTCTCTCACTCTCAGGGAGCCTATAGTTGCAG 4118201 37 100.0 45 ..................................... AATGCAACTGATGCTTTTCCTCTTTCGATTGCCCCCCAGTTTAGT 4118283 37 100.0 42 ..................................... AGAAACCATATTTTGAAGAAATACTTTGAACTTTTAATTGTA 4118362 37 100.0 46 ..................................... ACTCCCCATTTCTAAGGGAGTCAATTGTCCTTTAGGATCTCTAAAG 4118445 37 100.0 38 ..................................... AAATGGGATTACAAAAGACCCGATTCAATCAGTCTCGA 4118520 37 100.0 45 ..................................... TTCGGAGGGGCCGGTACCCCTTTATGACCGTGACCTCGCGCCTTA 4118602 37 100.0 42 ..................................... TAGACTCGGATTTGATACCCGGTTTTCCCAGTGAAGGGGTTT 4118681 37 100.0 45 ..................................... TACTTCCTGATAAAGGCATAGTTGGACAACACGATGGCCGTGTTG 4118763 37 100.0 46 ..................................... TTCCAGCCAGTCTTCTATTTGCTTATGTCCTCGGACGAGGAAGTCT 4118846 37 100.0 41 ..................................... TGTTTATCGAGTATTTGATTGAACTCCTTGCTTTTGACAAA 4118924 37 100.0 42 ..................................... ATCGCTTTGCTCATTCAGCATCGCGCGTTGTGCCATATCAAC 4119003 37 100.0 36 ..................................... GAGCCAGTTATCATCAGTGTAATCAAGCAAAGCCAT 4119076 37 100.0 54 ..................................... CTGGGGGGCAAGGATGGTGCAGCTCGTGCTGTGGCAAAAGAGATCGCAATCACG 4119167 37 100.0 42 ..................................... CTTGCAAGCCGAAATGTCGGCTATGGCTTTGCAAACGTCTTC 4119246 37 100.0 44 ..................................... ACGGTAATGAGCGCCTGGAGTGCTGCAGCTTTCTCGGGAGCCAC 4119327 37 100.0 45 ..................................... TTGGACTTTAGGCCCTTGTCCCAACTTTTTGAGACTTGACTTTTG 4119409 37 100.0 41 ..................................... TGTTTCTTGCGCTTTGTTACTATGGCTGATAGCCACAGCTT 4119487 37 100.0 43 ..................................... CACCTTTAATTTGAAATGCGTATAACATCATGTGTTGCTCCTT 4119567 37 100.0 50 ..................................... CCGTCAAAATAGCCCGTTATGTCTATGCTCACCCCGCTCTCGATTGCAGA 4119654 37 100.0 39 ..................................... TCTTCTCCGCGACGGTGAGAGGTGGGGAACTGCCACCCA 4119730 37 100.0 39 ..................................... AAACTGAAGGCTAATGTTTTCTTCGACCTTAGAATACTT 4119806 37 100.0 45 ..................................... CTTCTATAGACATGGATCTTCACTCACTTGGAATTCACTTCTCTA 4119888 37 100.0 43 ..................................... GAATCCGCGAGCTCGAGCAACGCGTTTCCCACCTTGGGATTGG 4119968 37 100.0 43 ..................................... CTGTCGGTGATTATCTCAAGGAGATCTAACTCCTCTCCCCCTC 4120048 37 100.0 38 ..................................... TTTTTACTATTGCAGGGGGAGTTGATGTATCCTCCACC 4120123 37 100.0 42 ..................................... AGGGATGAAGTCTTCCTCGACGATATCAATACACGCTTCTAA 4120202 37 100.0 44 ..................................... GCTACCCTTGTAAGGGCGATACCCGTCGGACCCTGGAATCCCCT 4120283 37 100.0 44 ..................................... GTAGCTGTAGTCATTGTTGTGATAATCTTTGCTACCGCATCGCT 4120364 37 100.0 39 ..................................... GTGGAGTTAACTCGTCTCTGTCACTTCTTTTGGTGAAGT 4120440 37 100.0 39 ..................................... GACCGAGGTCCTCGAGACCTGTGCCCCCTTAATAACGAT 4120516 37 100.0 45 ..................................... ACTGGCAAGCCACCGGCATAGCCAGCCAAGGAGCATTTATCGCTC 4120598 37 100.0 44 ..................................... ACTTAGGTTGATGTAGCCATAAATAAACCCCCTAAATTTAGGGG 4120679 37 100.0 42 ..................................... ACGCGCGTGTCGATACTCTTAGGGTTGTCAGGGTGATACGAT 4120758 37 100.0 47 ..................................... CTGTCACAATGCTCCAGTGGAGGGCGGGCCTATCGATAGCATAAATA 4120842 37 100.0 38 ..................................... CAGGGAGCTATCTCTTCTTTCTCAATTTCAAGAATGAG 4120917 37 81.1 42 ...TA.........G..T..T.TC............. AACCCGGAACCACAAATAATATCTGTTCCGGGTTCTCCTACC 4120996 37 83.8 38 T..TA............AAG................. CAGGGAGCCATCTCTTCTTTCTCAATTTCAAGAATGAG 4121071 37 86.5 40 ...TA............AAG................. AGCTTTTGAAACTTAGCCTTAATAAAAAGAGAATCAGATA 4121148 37 89.2 0 .................AAG..........T...... | ========== ====== ====== ====== ===================================== ====================================================== ================== 41 37 98.6 43 GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Left flank : TCGCGGATGTGGTGGCCAATCTTGGCGACAGGTTCCCCGATAGCCAACTACACCTCACGCCTCCCCTAGACCACAGCACACACCTGGGGGATTTGATTTGTACTTGGGCGAAATCTTACCTCTAAGATATCTTCTCCCTGCTCGGGTGGGGGGTGATTCTCATAATTATTGGGGTTTTTTGAGGCGATCGACCCTCCCCAATATCTCTGTTGGTTTCGGGGTAAGTGTTTGGGCTTGTGTAAAGTAATGTTACAGATTCTCATAACCTCGCGCGAGTTTTAATTTGGCGATCGTTCAAGTAAACTGGAGCCAACAACAGAAAAGTTTTTGTTTTTGGGGGTTGACACTCTGGCGCTCTCTCTGATACTATTAATTTCAGTGAAAACAAAGGAATTTGCTTCGACAAAAACAGCCTGTAAAGTTTTGTTAAGCACCTTCTAGGTATGCTCGCACAAACGCACCTTGAAAACCCCATACTGCAACGTTTCCAAAGGCATAGG # Right flank : CTTAACTCCACAAGGACACCTCGTCGCTTGTGGTGAAAGCGACCGTCAGACCCCAGCAACTCCCCCCAGCAGAGCGATCGCATTTTCACAGCCCAGCAACTCCTCTAGGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCCACCAGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCCACCAGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCCACCAGAGCGATCGCATTTTCACAGCCAGCAACTCCTCTAGGAGCGATCGCATTTTCACAGCCCAGCAACTCCTCTAGGAGCGATCGCATTTTCACAGCCAGCAACTCCTCTAGGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCCAGCAGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCCAGCAGAGCGATCGCATTTTCACAGCCAGCAATTCCCCCAACCAGAGCGATCGCATTTTCACAGCCAGCAACTCCCCCAACCAGAGCGAAACC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGACCCTACCAATTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 6 4161970-4162312 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013008.1 Arthrospira platensis YZ chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================================== ======================================= ================== 4161970 43 100.0 34 ........................................... ATGATTGGGTGTAGGGTGCGTCAGACACCGAAAA 4162047 43 97.7 34 ..........................T................ ATGATTGGGTGTAGGGTGCGTCAGACACCGAAAA 4162124 43 100.0 39 ........................................... GGCGGCTGAAATCCACACCGGATAATTGAGGGCTGACGC 4162149 43 100.0 39 ........................................... TTGAGGGCTGACGCACCACAAAAGGCTGCTGAAATCCAC 4162197 43 93.0 28 .....................................GG.T.. TTGAGGGCTGACGCACCACAAAAGGCGG 4162268 43 90.7 0 ........................T...............GGT | CT [4162297] ========== ====== ====== ====== =========================================== ======================================= ================== 6 43 96.9 35 CTGAAATCCACACCGGATAATTGAGGGCTGACGCACCACAAAA # Left flank : GATTGTTTATATGGTGGTCAGGGTAATGATACTCTCTATGGGGGTCGAGGTAGGGATTATTTAAGTGGCGATCGCGGTAATGATTTCCTGGTTGGTGTTGATACTAGCGCTGATTTTCCGGGACTGACAACTATTGACACCCTGGTTGGCGGAGAAGGTTTTGATACTTTTGTATTAGGCAATGAAAACGGACCGTTTTACGATAACGGTAATGATGATATTAATGGTGTGGCTGACTATGCTTTGATTTTGAATTTTAACAGCACTACTGATGTCATCTTACTGAGTAATGACGATTATTTATTCTCTACTGATATCCCCCAACCCCTCCCACAAGGAACTGCTATTTTCCGTCGGACTCCCGGCGAAAATGAGTTGATTGCTATTTTAGAAGGGGTGGTCGGTCTTCAATTTGATGGCACTAATCTTGATGATGGACCGATTAGGTTTATCTAGCACCACAAAAATGATTGGGTGTAGGGTGCGTCAGACACCGAAAA # Right flank : TGAATGTATGCACATAATGGCGTTTTTGTCAAGAGGTACAAAAAAAGCGATCGCTTATTACTCGAAAACTCGTGCATCGTGAATTTAATATTTTGCTGAGAGAATAATTTATCTGGCGATATAATCGTAGTTGTAGCCTTTATTTTTGCATAATGACAGAGTAGCCCCTTGGTATCTATTTCTGAGATGATACCATAACCCCTATAATCTCGTCAACTTTTTGCGAGGGATTTTCAATAAAAATGTATTAATTCTTAACGTTCTTTGGAAATTCCAATCGATGGGGCTGTATAAATTAGTAAAGTTTATGTGATGGTGGGTTTTGGGGGGATGGATTGTTGATGAAAAAAAAGGCTATCCTGAAAGTGGATAGCCTGTGAATTATGAAGGAAAAATGGGGTTAAAAATGAGGCTTAGGCGATCGCAGCCATTTTGACATCGCTAGAAGCTAATAACTCCTGCAACTCCTCAGAATCAACGGTTTCTTTCTCGATGAGCAT # Questionable array : NO Score: 2.71 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAAATCCACACCGGATAATTGAGGGCTGACGCACCACAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 7 4989568-4991076 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013008.1 Arthrospira platensis YZ chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 4989568 35 100.0 34 ................................... CATCATCTCGATGGCATGGGAGTGTTCTCAACTT 4989637 35 100.0 36 ................................... CTGCCCAAGGCCTGCCGCCCCTTAAGTCCCTAAAAC 4989708 35 100.0 37 ................................... GTTACATCGTTACAGATGTCTACTTTGGCGGTCGCGA 4989780 35 100.0 32 ................................... CAGTATAAGGTTGCATATGCACATGTCAACCA 4989847 35 100.0 41 ................................... AGGAAGGGTGGATCGTGGTATTGACATGTAAACGAGGTCAA 4989923 35 100.0 36 ................................... TGTTTCATGGTCTACAAGGTCTACAAGGGGGGGCGA 4989994 35 100.0 37 ................................... ATTGGTGTCCTGAGATATCATTGTGGTATCAAGACAA 4990066 35 100.0 35 ................................... TGCTTCGTCCCCTTCGTCCTTGGGACTGGGAACTT 4990136 35 100.0 40 ................................... CTTTGATGTCTTTATTCCCAACGGCTACGGCGGCTTCAAG 4990211 35 100.0 35 ................................... GAAGGAAGAGGCTTTGTCGTGGAAGGAAGCGACAA 4990281 35 100.0 34 ................................... CAGTGAACGATGTAAGCATCATACGGTCCATATC 4990350 35 100.0 32 ................................... CGAAAGACAAAGTTTTTGTCCCCCACCTTCCA 4990417 35 100.0 35 ................................... TACAAGGTCCTCCTCCACGGGGAACGACAAGTATT 4990487 35 100.0 34 ................................... CGGAGGAATGTTTGTTGTTCGGGCAGCAACCTTT 4990556 35 100.0 33 ................................... GAATAGGTCTAGACGCATTCAAGTACCCATCTG 4990624 35 100.0 34 ................................... CAGTTCGCTCCTTAAAGTGCGAACTATTTGGGTT 4990693 35 100.0 32 ................................... CAGGGGGGAAGCCAAGGTCTATCTCGGAAAAA 4990760 35 100.0 36 ................................... AAACTAATCTCCGCTTGTATCCGTGAAGGGGAAGTT 4990831 35 100.0 34 ................................... TAGACGACGCATTAAAGTACTACCCATCTGGCTA 4990900 35 100.0 37 ................................... GCTAATAACCTTCTTTTTTTTGCTATTCCATTGTCAA 4990972 35 100.0 35 ................................... CTGAGAATTTGGGTCACGGTGCAGATACTGTACTG 4991042 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 22 35 100.0 35 GTTGCCATACGTTCGACTTTCAAAGAAGTCTCAAG # Left flank : ATGTTTTTGATGGTAGCTTTCAGATTCGTTTAACTCTCCCAGGGCATCGTAAATATTCCCCAAGCCGTTGTAACAAACCGCATCACAGCCCGGATTCAATTTTCCGAGGAGAGATTTATAGAGTTTTTCTTGTTGGTCATAATAACCCCAAACTCCCAATTGGTCGTGTAATTCTTGGTTGCTTTGGGGGTCAGGAATCACTGTCAAAATTTGGGTCGCCCGCCGCCAATCTTCCACCTCCCATAGGTGATAAAAAGACTCCAGGTAATGCTGCACCCGTTGCAGGGGGGTGGCTTCTTGGGGGGGGATGCTTTGATGACACAAAAAATATTCGACGGCAGTATAAGTAGCTAACTGCTCGATGGGAACTGTATTGATATCGATATCAAGTTCATCCCACAGCATTGGATGTCTCCTTTTGGGTATCCCATTGGCTCTGAAACAGTTTAGCACTACTTCCGTTCAAAAAGCGATCGCTTTTTGACATTTACAAAAAAGTA # Right flank : GAGCATAAGAACGAAATCCTTGCTCTGAAGGGATTCTAACCCACCAATTCTATAGGGGTCAAGTCAGTACCCCAATTATTGACATAGATTAGCAATAATTGAGTTAACAAAATGACTGAAACCCGGTCGTAGCAGTCCACCTATAGGGGTCAACGAAAAAATCAGTGATTGGGCGGTTTGCCAGACCCCTGTAGGTGAATGGATGTTACAGGTCAGACCTGGGGCATCATTTGGAAAAAGCTAAATTTTCCACAACATCGGTCGATAGGTCTCCCGTTCTCCCATCAGACAGGAGATGTACTCCCACACCTGTAATTCCAGACAGCGATAGTAGCTGACCTTGTGACCTGTATGGGGATGGGTGGTGGAGAGGGATAGCTTGTCCTGCCAGTGCTTGAGATACTTTTTCAGAGCATCCGAATGTAGGTAAACTGATTCATTTAAGCTGAACAGTCCTGAACATTAATTGACAATGCTCGGACTGTAACTATAGCAATACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCCATACGTTCGACTTTCAAAGAAGTCTCAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //