Array 1 75629-74657 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKD01000006.1 Akkermansia muciniphila strain GP30 scaf-6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 75628 33 100.0 34 ................................. CCGGAAGGAAAGGGAACGAACAAATAAAACCTAA 75561 33 100.0 34 ................................. CGCATAGGCGTATTGTGATAAAGTTGCGTGGTGG 75494 33 100.0 34 ................................. AATTCGTGACTGCTGTTCTCTTAATTCTGCAGCT 75427 33 100.0 34 ................................. CTTGTACAGGACATAGACTTCGTTCTCCATGATG 75360 33 100.0 34 ................................. CCGTGACGTAACCCTTGAACGCCAGGAGGGGGGA 75293 33 100.0 34 ................................. AGCCTTATCGCCATCTGCTCCAGCAGCGGCACCC 75226 33 100.0 34 ................................. GCCACAATCGCCCCCGCCCGGTCCAGCGCGCCCT 75159 33 100.0 34 ................................. ATGATTTTGTTCTTTCGGTTGTTTGTTTTTTCCG 75092 33 100.0 34 ................................. CATTTTATGCAGAGTGTTGCCCCAATTGCGGCAA 75025 33 100.0 34 ................................. TCCGGCATGTGCTGAGTATAAAGCAAACTCGTCC 74958 33 100.0 34 ................................. GTCAGCTTCATGGGGAGCCTGTTGGAATTGGTAA 74891 33 100.0 35 ................................. TCTGGTAAAGAACTTATAAAATCTTACGGCTTCCT 74823 33 100.0 34 ................................. TGGGCTGGCACGCAAGGGTGGCTTTCCATGCTGG 74756 33 100.0 34 ................................. TCGTTGAGATTATTCAAAGCTATAGCAGACAAAT 74689 33 97.0 0 .................A............... | ========== ====== ====== ====== ================================= =================================== ================== 15 33 99.8 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATCGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATTGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTATAAGAGAAGGCTAGGTGATGATGGCCTTCTCCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCA # Right flank : ATCGGAAAGGCTTGCTATGTCCGGATTTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTCGTTGTTTATTTTTCAGCCGGGGGCTGCCGGTTCAGATCGAGTTCTGCGGGAGGGAGGGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCCTGTGCAATGAGGTCCTGCAGGATGTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 85574-84759 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKD01000006.1 Akkermansia muciniphila strain GP30 scaf-6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 85573 31 100.0 33 ............................... GGCCCTACGGGAGCCAACATACGATTTAAAACC 85509 31 100.0 34 ............................... TTGATATTAGCTACGTTAACGGAAACGTTATTTT 85444 31 100.0 35 ............................... CTTATACATTAGTTTTCAGGAACATACACGTTTCC 85378 31 100.0 34 ............................... GGCTTTATGGCTCCTGCTACAATGTATCAAAACT 85313 31 100.0 34 ............................... TACCAAGCTAGCAAAAAATGCAAGTTTCCCGTTC 85248 31 100.0 34 ............................... CGGAGAAGGGTACGATGTGCTGGAGGAAGACCGG 85183 31 100.0 35 ............................... TTTGAGTTCCAGCGTGCATCCGTTCGGGGCGGCGG 85117 31 100.0 34 ............................... CGTCGGCTGGTGCGCTCGGAGGAGGAAATTACAG 85052 31 100.0 35 ............................... TTCAAGCCGCCCAGTAATAGGGCGGCTTTTTTATT 84986 31 100.0 34 ............................... AAATAATCATTGAAAATCCCCACGGCTTGCTGTG 84921 31 100.0 34 ............................... GCCGCCTCCTTGGCCGCCCCCCGGAACCGTGCGG 84856 31 100.0 35 ............................... CAGGAATGCGTAGCGAGGTCGTACCTCATTGATAA 84790 31 80.6 0 ................AAT....C.....CA | G [84763] ========== ====== ====== ====== =============================== =================================== ================== 13 31 98.5 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : CCTTGGGGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGCGTTGCCATCAAGGACCTGTTGCACTGGCTCATTGCCCGTGTGCGTTAACAGCGCCTTTGACAGCCGCCGATGCCGGAAAACACTTCAAGGCCACTCCATTAATATGGAGCGGCCTTTTGTTTTTGGAATGGCAGAGAAAAAAAGTTGCTGGACGATAGGCCGCTGACCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATTGCTGAACCGCTGATCTGTTTGCGCCAACCCCAAGCTCACAGAAATTCCCCGGTAGATCGGCGATTTCTGTAAGTCCTTGAAATCAGTAGATTGACATTCTCTCCAATAAAATATAAGGGGGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTGAACGCATATCCCCTTCCGCC # Right flank : TCCAATGTCAGCCCTACTGGATGGGCATTTCATTCAATGGGGTTTGCCGGAGGAGGAATGCTCATTGAACAGATTTTCTTGGTGGTTAATAAAGAAAGATAATGGTGAAGGTTTGTACATTCAGCAGGGGTAATCTGTGACACAAATGAAACTTCTAGAACCTGGAAGAATCAGTTATAGGAACTTGGCCATGGGATGTTAGGTTCCCATTGCATCTTTGCATCAAGAGAGGAACAGACGAGATGATTAGAAAGTGTTTGGAGTCGGAATTGGAAACAATTCATGAAATTATCAATGATTCAGCCATGGCTTATAAAGACAGGATTCCTGCCGATCGATGGAAGGAACCTTACATGCCCATGGATGAATTAAAGGAGCAGATTAGGGGTGGTGTGGTGTTTTATGGTTTTGAAGATAATGGATACCTTCTTGGCGTGATGGGGATTCAGGACCGGGAAGACGTTAAGCTCATACGTCACGCCTATGTCAGGACGTGCGCC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 93024-95906 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKD01000001.1 Akkermansia muciniphila strain GP30 scaf-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 93024 31 100.0 34 ............................... CCGAAAATAGAAACCACAGCAGCCAACAGAAGAA 93089 31 100.0 34 ............................... GAGATAACAATCATTGAGAAAGAGGAAACACCTA 93154 31 100.0 34 ............................... CCAAAAATGGGTGCTGAAAAATCCACATAGGAAT 93219 31 100.0 33 ............................... ACAAAAGATTATTACGTGCAACTTTTCCCCGCC 93283 31 100.0 34 ............................... AAGTCAATTTCTCCCGGACAGTTTTGCGGAGAGC 93348 31 100.0 33 ............................... CAGCGAGCACCCATTAGGAGCAGCGGCCCAGGC 93412 31 100.0 33 ............................... TTCATCCTCCCGCGCCAGCAACCGCGCTCCGGC 93476 31 100.0 34 ............................... TTTGCCGTATCTGTTAATAAGTGCGGTCAGGACA 93541 31 100.0 34 ............................... GCGTTTTTCAAGGCAAATGAACAAGAGCTCCGGG 93606 31 100.0 34 ............................... CGCCTGGAGCTTTTCCAGTTTAGCTCGTACTCCC 93671 31 100.0 34 ............................... ATTCTCTGGCTAAGGTGACCGTCCGCGTGAGGAT 93736 31 100.0 35 ............................... ACGCCGTGGTGCTGCGCCTGCAATGCCATGAGATT 93802 31 100.0 34 ............................... CCGCATCATGACGGAGGCCATGCGGCGCGGATAT 93867 31 100.0 34 ............................... CGCCTGCTGCATCATTAGGGACGGCGGAAGGCCG 93932 31 100.0 34 ............................... TGGCACTGCTGCCAGAAAACCCCACTCCTTCAGC 93997 31 100.0 33 ............................... TCCAGCGGTAAGCCGTGCTTTTGTTAAGGCCGA 94061 31 100.0 34 ............................... AGCCACCTATCGAGTTGTCATTGCTCAATCTGAA 94126 31 100.0 33 ............................... AAGGATGTCATGAAACGGCGGAATTGATCAAAT 94190 31 100.0 34 ............................... CGGGACCGCTCATGAGCGGATGGGCGCGGGACAT 94255 31 100.0 34 ............................... TCCAGGTCAAATACACCATAGCGGACTTCCTTCT 94320 31 100.0 33 ............................... CTAAAATTCACTCCGTCAAGGATGGCTTGCCAT 94384 31 100.0 34 ............................... AATCCACACGCGGCAAAAGAACAAGATACCATTA 94449 31 100.0 33 ............................... CTGCATCATGCAGGACGCCCCGCTTTCTCTGGT 94513 31 100.0 34 ............................... CAGGTCCCCTGGCTTGGATTGTTCCACGTCGCGC 94578 31 100.0 35 ............................... CAGTTTGGCGCGCACGTCCGGAGAAATGGCTCCCA 94644 31 100.0 34 ............................... AGGTGCTGACGTGGCATTCTTTCGGCCAGGACGG 94709 31 100.0 34 ............................... CGTTTTTGGGGCGTCATGGTCAACTTCGTTCCCG 94774 31 100.0 34 ............................... GCACAATTCCCGATGCGTTCGCGGGATTAAGGAT 94839 31 100.0 34 ............................... TTCATGAGCGATGTTCCCGCCCCCTGAAGATTGA 94904 31 100.0 33 ............................... CGGAACTCCGCATCAATATCGTCCTTGTACAGA 94968 31 100.0 33 ............................... ATCATTGTACCCGTACTGGTACACGCGCCCGGA 95032 31 100.0 34 ............................... ATGGATGATGCACGTAAGCAGGAACTCCCGCGTA 95097 31 100.0 34 ............................... TCCTTTCACTCTTGCTATGCAGGTCCTAAGATGC 95162 31 100.0 33 ............................... ATCTACCTGGATTTCCGCGAGGTGGTGAAGGAA 95226 31 100.0 35 ............................... TTTTTCCCTCTTGACTTTCGTCCCTTCTTTTTGCG 95292 31 100.0 34 ............................... TTCCACGTCCACTTTTTGCGGCTTGCCGTGTCCC 95357 31 100.0 34 ............................... TGTTATCGGATAATCTGTTTTTAGATATTGGCGC 95422 31 100.0 34 ............................... ACGCACCCGCGCCTTGTACACCCCATCATAATAG 95487 31 100.0 34 ............................... AGCAGTATTCAGCCATCCGGCTTTATCATCATCC 95552 31 100.0 35 ............................... CAAAAACGCGTGGACGACGCCCGCGCCAGCCTCGC 95618 31 100.0 33 ............................... GATAAGCTTGTATTCCGCCAGGGTGATAGCCTG 95682 31 100.0 33 ............................... CGAAAATGAAAGTCCCCTGGCTTATATGGCCTG 95746 31 100.0 34 ............................... TTTTCATCACTTCCGCGTCGCCGGAATTGGTGAT 95811 31 100.0 34 ............................... GGTTCCGGCGGCCCTATCCGTGAAAGCATCTTTA 95876 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== =================================== ================== 45 31 99.8 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCCTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGGGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGGGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATTCCTGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : GTCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 400974-399708 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKD01000001.1 Akkermansia muciniphila strain GP30 scaf-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 400973 31 100.0 34 ............................... CCTTAACGCTCCCGGGATAGAAGCACACATGGGC 400908 31 100.0 33 ............................... CGGAGGATTGCCCGGAAGAAGATAAACGCGAAA 400844 31 100.0 33 ............................... TCCCAATCCCCAAACCACTGCTTAAACTCCGGC 400780 31 100.0 34 ............................... GCAAACTCCTGCGCCACATTTGCCCCGTAAACCC 400715 31 100.0 34 ............................... GACTAGCAATTATATATGCCCGCGCGGCTTTATA 400650 31 100.0 34 ............................... TTCTTGTTTATAATAATTTTTCAGAACCGCGCCA 400585 31 100.0 34 ............................... GCCGTCAAAGAAATAAAAATATTGTGCCCATGAA 400520 31 100.0 34 ............................... TTGTTATCATCAATAAACATTAACGCCCCCCATA 400455 31 100.0 35 ............................... CCCTTAACATGTCTTTATATTATCATTTTAGATTA 400389 31 100.0 34 ............................... GATGGAGGTGCGGTAGCGGCTTGCCGCTTCCGGA 400324 31 100.0 35 ............................... CCCACAATTGACCAAACAAGCCTTTTTGCAGGCGG 400258 31 100.0 35 ............................... CGGAAAGTGAAATTCAAGACTCCGGAGGTTAAGGA 400192 31 100.0 33 ............................... TGGCTGGGGGGAGATTGTCTGGAAGAGACTGGA 400128 31 100.0 34 ............................... TGGCGGAACGGCTGGGGCTGGATACGGATGAAGC 400063 31 100.0 34 ............................... AATATTCACGCCACGGCGCACGTGCCGGGGGATC 399998 31 100.0 34 ............................... CGAAGAATGCCAGCCGTATCTGGCAATTCTTCTT 399933 31 96.8 33 ..............G................ GGGCAAATGGGGCTCAAAACGGTCATCAAGCGT 399869 31 96.8 34 ..............G................ AGGATAGTATTGCGATACCAGAGGTTATTGAAAA 399804 31 96.8 34 ..............G................ CCGGGAGCCAAGACAAAGCGGCTTGTCCATGTCA 399739 31 83.9 0 ..............G......A..A....TA | G [399721] ========== ====== ====== ====== =============================== =================================== ================== 20 31 98.7 34 GTCGCACCCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGAATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGGGAAAACGGCGTGCCGCCCGGGAGGCCTGTTGTTTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACATGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGCAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGGCCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTCCAGGCC # Right flank : GTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGAGAGGTGATTATTTTGATAAATGGTTTTAAATGGTTATTTATTGAATATTCTTTTAAGGAGGATTTTTATATTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGGTTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGCATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCTGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGACC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //