Array 1 71202-69412 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAYD01000042.1 Paraburkholderia oxyphila NBRC 105797, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================================== ================== 71201 28 100.0 32 ............................ ACGAGCACCTTGCCGCTCACAGAGACCGCTTC 71141 28 100.0 32 ............................ ACTTCGAACGTTCCACCCTCGCCCAGCGTAGC 71081 28 100.0 33 ............................ CACCATAGGCGCCGTCCTGAATCAGCCATCCCG 71020 28 100.0 32 ............................ AGATCACGGCGGCGCGGATCGAATCGCGCCGG 70960 28 100.0 32 ............................ AGTGCGTCACCATTTCAGACAAGCCCGCGATC 70900 28 100.0 33 ............................ TCGCGTGGTCAAGTCCTGCACGACGGCAACTTC 70839 28 100.0 32 ............................ GCGACCCAGATGAAACGCACGTTCAAAAGCAA 70779 28 100.0 32 ............................ ACGTCGAACCGCGTTTCGGGACGAGCATCAGG 70719 28 100.0 32 ............................ TTGTCCTTTCGCGCCTTGAGCGGCGCCGTGTC 70659 28 100.0 32 ............................ AGATGATCCCGAGGCCAGGCAGCGACGACTCG 70599 28 100.0 32 ............................ TCACGTTCGCGCTCGTGCTGATCATCGTTTCC 70539 28 100.0 32 ............................ CTCGCCCAGCGTAGCCAGTGCCGCGTTCGCGA 70479 28 100.0 32 ............................ TATGCGAATAACTGGCTCAGCCCCATCACTCA 70419 28 100.0 32 ............................ GCCGGCGGTACACGCGCAAGGCCAATCGCTTT 70359 28 100.0 33 ............................ CTGCACGCTCGCCATCGGCGGCGATACGGTCAT 70298 28 100.0 32 ............................ CACGCCAACCGGGTTGAGTTTGGTGTTGTAGT 70238 28 100.0 32 ............................ TGCATATAGAGTTGAATCGCGGTGCGCGCCGC 70178 28 100.0 32 ............................ CCCAATTTCTCGCAAGTCGATCAACTTGCGAA 70118 28 100.0 32 ............................ TTCGATCACGGTTAGCCAGGGTTGCGTATTGC 70058 28 100.0 32 ............................ TTTTCAGTACCCTTTCCAATCGAATAAGTACA 69998 28 100.0 32 ............................ TCGAGCTCGATAGACGTTTCGGTGCCCGCGGA 69938 28 100.0 51 ............................ AACTCCCGCGTGAAAATCTCTGCTTTCGTCCATGTTCGCTGCTGTCGTGCC 69859 28 100.0 32 ............................ TACGCCACGGAGGGCGCTTGGCTGAAAAAATC 69799 28 100.0 32 ............................ AAACATGCAGCCCGGCACGCCGCCGCCGCAAC 69739 28 96.4 32 ..........................G. GTAACCTGCAACGCACACACCAGATGCCTTAT 69679 28 100.0 32 ............................ TCCTGGTTTGGGGCGAGCGCCGTCTTCGCGCG 69619 28 100.0 32 ............................ AGGGGCAGATACCACACCTCGCCGAATTGATC 69559 28 100.0 32 ............................ GTCACGTCGGCGTCGAGCGTAACGTGTTCCGC 69499 28 100.0 32 ............................ CGTTCACGAAGCTCGACGCCTCCGATGCGAGA 69439 28 96.4 0 .......................G.... | ========== ====== ====== ====== ============================ =================================================== ================== 30 28 99.8 33 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : GCGCTTTATGATGATGTTATGAAGTTGTTTGAGTGAGGTATTGGGAGGATGATGGCTGGATTGCACGCCGTGGTGGTTTGCTTCGGGCGTTGAGGCACTTTGCCAGGGAACGTTTCGTGTCGTTGCCGTGCTGCCTGCATGGCAGCGAACGCGATGGTTGCGCCTTGTCATGCCACCAAAATTCCCTTGACTGCCTACGCGGCAGCGAACGTCCGCCGCCGCGCGCTGCGCCTCGGCGGCGTTTTCTTAGCTACCTACGCGGCAGCGAACAAATCGTGACTCGACGCTATCGCGACGAAGCGTTTCTTAGCTACCTACGCGGCAGCGAACACGATCACGGGCTCATCGTCGATCTGGATCGTTTTCTTAGCTGCCTACGCGGCAGCGAACGCGCACACCGGCCCATCCGGGTCGGGCTTCACTTTCTTAGCTGCCTACGCGGCAGCGAACAATCTAGGACATTTCACGCCCCGGACTGCACTTTTCTTAGTTGCTTTCAG # Right flank : TAACAGAGCGTCGCTCATTCGCGCGCGCCAACGTTCGTTCCACTGAAACCCCCAGAACTCGCCAGTAGCTTGTCACCAACGTCAGCGTCACACCATCAAATCGCCGGCCGCTCCAACGCCACCCATCGCTGCACGGAAGGCCGCTGCCACTGATACCTCACATAGTCCGCAAGCAGCGGCGGCACCGCATCGCCATTCGCCACGAGGCGATTGAGCATCAACGCGAGATCAGTATCGGCAATGCACCACTCACCGAACAGGTTAGGCTGCCCATGCGCAAGCAGCGTCTCACACACCGCGAAGAGCTTGCGCACGCCGTCCTTGGCCACAGCGGAAAGCGGCGTATCAAACGGATGACGAAACACGACCTCAGTCGGCCTCTCGGTACGAAGCTGCAGAAGATCACTGCGCAACCAGGCCTGCACCTGACGCGCTCGCGCACGCTCCTGCCGATCCTCGGGATAAATCGGCGGCTCGGGAAACGCCTCATCCAGATACTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 71252-71579 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAYD01000042.1 Paraburkholderia oxyphila NBRC 105797, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 71252 28 100.0 32 ............................ GTGAAGCCCGACCCGGATGGGCCGGTGTGCGC 71312 28 100.0 32 ............................ ACGATCCAGATCGACGATGAGCCCGTGATCGT 71372 28 96.4 32 .................T.......... CGCTTCGTCGCGATAGCGTCGAGTCACGATTT 71432 28 96.4 32 .................T.......... ACGCCGCCGAGGCGCAGCGCGCGGCGGCGGAC 71492 28 85.7 32 ....................TC...GG. ATTTTGGTGGCATGACAAGGCGCAACCATCGC 71552 27 78.6 0 ..........AT.C.......-.G.C.. | C [71575] ========== ====== ====== ====== ============================ ================================ ================== 6 28 92.8 32 GTTCGCTGCCGCGTAGGCAGCTAAGAAA # Left flank : TTTCTAAGCTGCCTACGCGGCAGCGAACTTGCTTTTGAACGTGCGTTTCATCTGGGTCGCTTTCTAAGCTGCCTACGCGGCAGCGAACGAAGTTGCCGTCGTGCAGGACTTGACCACGCGATTTCTAAGCTGCCTACGCGGCAGCGAACGATCGCGGGCTTGTCTGAAATGGTGACGCACTTTTCTAAGCTGCCTACGCGGCAGCGAACCCGGCGCGATTCGATCCGCGCCGCCGTGATCTTTTCTAAGCTGCCTACGCGGCAGCGAACCGGGATGGCTGATTCAGGACGGCGCCTATGGTGTTTCTAAGCTGCCTACGCGGCAGCGAACGCTACGCTGGGCGAGGGTGGAACGTTCGAAGTTTTCTAAGCTGCCTACGCGGCAGCGAACGAAGCGGTCTCTGTGAGCGGCAAGGTGCTCGTTTTCTAAGCTGCCTACGCGGCAGCGAACCTGAAAGCAACTAAGAAAAGTGCAGTCCGGGGCGTGAAATGTCCTAGATT # Right flank : ACGACACGAAACGTTCCCTGGCAAAGTGCCTCAACGCCCGAAGCAAACCACCACGGCGTGCAATCCAGCCATCATCCTCCCAATACCTCACTCAAACAACTTCATAACATCATCATAAAGCGCCAGCGGAATGCTCACTCCATCACGCTCGCTACGCTCACGCGCCTCAAACCTCCGCTGCGACGGCAAGCGCGCCCCTTGCCCAACCACCGCATCAAACAGCCGCTCAGCCCTTTCCTGCCCCGCCTCATAATCCGCGCCAAGAAACCGCCTCGGATCAATCGCGATCACCAATTCGCCATGGCAAGGACTCGCCCCCGCACCCTCATCGAATGCCTGCGACTCCATGCTCGTAAGATCGCCAATCAGCGCGCCCGCCAGCAACTCCACCATGGCCGCCAGCGCCGATCCCTTGTGACCGCCAAACGTCTGCATCGCGCCTTCGAGCGCGGCGCGCGCATCCGTAGTCGGCTTCCCCTCACGATCGATCGCCCAATGCG # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTAAGAAA # Alternate repeat : GTTCGCTGCCGCGTAGGTAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //