Array 1 214516-214119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDHV010000003.1 Salmonella enterica subsp. enterica strain SGEHI2016-PSU-BS-095SL opera_scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 214515 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 214454 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 214393 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 214332 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 214271 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 214210 29 96.6 33 ..........................T.. GGGAAAAAATATTTTGCCAAAATGTTCACTTAC 214148 29 96.6 0 ............T................ | A [214121] ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATAAACCGAACTAAACGCACCAATCAGAGGGCTTTTTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCGGCGGCAGTGGTTAATATCAGAAATAAGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGGTTTGGCTGAATTTTTGGTGTGGGCTGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTTCAGGCGAGCATCCGTAAAATTCTAATGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGACCTGACTGAATCTCCTTTTTCAGTTGGGGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAGCGGGGATAAACCGGTCTTTTTCCCTGCCCATCTTTCAGCTTCTAA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 217842-214763 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDHV010000003.1 Salmonella enterica subsp. enterica strain SGEHI2016-PSU-BS-095SL opera_scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 217841 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 217780 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 217719 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 217658 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 217597 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 217536 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 217475 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 217414 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 217353 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 217292 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 217231 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 217170 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 217109 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 217048 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 216987 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 216926 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 216865 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 216804 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 216743 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 216682 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 216621 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 216560 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 216499 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 216438 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 216377 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 216316 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 216255 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 216194 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 216133 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 216072 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 216011 29 100.0 32 ............................. AAAAAAGCGCCCGCATGATGGCGCGGTTACTT 215950 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 215889 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 215828 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 215767 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 215706 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 215645 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 215584 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 215523 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 215462 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 215401 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 215340 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 215279 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 215218 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 215157 29 100.0 32 ............................. AACGCTGCTGGCAGTCTGACCCTATTGATTAA 215096 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 215035 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 214974 29 100.0 32 ............................. GCCGGCGGCAGTGGTTAATATCAGAAATAAGG 214913 29 100.0 32 ............................. GAGGTTTGGCTGAATTTTTGGTGTGGGCTGGA 214852 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 214791 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 51 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GCGACCTGACTGAATCTCCTTTTTCAGTTGGGGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAGCGGGGATAAACCGGTCTTTTTCCCTGCCCATCTTTCAGCTTCTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAATCGCGCGCGCTGGCAGGGGAAATGATGGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGGGGTTTCCACTCAAATACAGGTAGAACCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTCCGTGTCATTTTTATCGCCAGCACGCCGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGGGTGTTCCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 235636-234388 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDHV010000003.1 Salmonella enterica subsp. enterica strain SGEHI2016-PSU-BS-095SL opera_scaffold_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 235635 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 235574 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 235513 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 235452 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 235391 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 235330 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 235269 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 235208 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 235147 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 235086 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 235025 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 234964 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 234903 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 234842 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 234781 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 234720 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 234659 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 234598 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 234537 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 234476 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 234415 28 86.2 0 .........A..T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //