Array 1 110989-107814 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMOF010000003.1 Bifidobacterium adolescentis strain D46t1_190503_C9 NODE_3_length_186058_cov_27.6129, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 110988 33 100.0 33 ................................. ATGCATCTCTTCCTCAAACCTGAGCCACGCCAT 110922 33 100.0 34 ................................. CAGATGGTCTAATAACAATACGTCAATATCAACG 110855 33 100.0 34 ................................. ACCGATTCCATGAAAGCTAACGTCTTGAAAACCA 110788 33 100.0 33 ................................. ATTTGGAAGCCGCTCTGGCCGCCCGTATTGCAC 110722 33 100.0 33 ................................. CTCCGGTAGGGCACCGCCCAGCTGCGGCTTCGA 110656 33 100.0 34 ................................. GTAATTACGTATATTAAAAACCGTCGAAAGGAAA 110589 33 100.0 35 ................................. CCTTGGTGGGATGATTTTCGGCCGATTCCCAGATG 110521 33 100.0 33 ................................. TTGCTCACGTGTCCGCTCCACAAGTCCAGTTCG 110455 33 100.0 34 ................................. CCGCATGGTTTGCAATTCACTGCAAATCACTCTA 110388 33 100.0 33 ................................. AAGAACGGCACGCACCGCCGCCGTCTGGGTGTC 110322 33 100.0 32 ................................. TCGCTGGAACATTAACCGAAAGGAGTGCCATG 110257 33 100.0 33 ................................. CCGCTCCTGGAGGCAGATCATGTCCGCTAAAAC 110191 33 100.0 34 ................................. ATTTGGAAGCCGCTCTGGCCGCCCGTATTGCACG 110124 33 100.0 32 ................................. AAGAGCGGCAACGGCCTGACGTTCTACGGCGA 110059 33 100.0 33 ................................. GACATTCCAGTGATCGCGAGGGAAGTGCAGAGG 109993 33 100.0 34 ................................. ACATCAACAGCTCAGCAGATCGTCGGCAAGATTC 109926 33 100.0 32 ................................. GCCTGGTATTCGCCCAGCTCGCACATGACCAT 109861 33 100.0 34 ................................. TTCGAGTCCTCATACTTGCCGCGCGTCGGATTGT 109794 33 100.0 34 ................................. TTGATCGTGTCGCGGCAGAGTTCGTCCATGCGCT 109727 33 100.0 33 ................................. GGATTAGGCGAAGTGCTGGAAGCATTAGTCAAG 109661 33 100.0 32 ................................. CATGCTGACCGGCTTGCCGGTGTTGCCGCCAT 109596 33 100.0 35 ................................. TCCGAGTCGCCTACCACGGTGATAACCTGCCTCTT 109528 33 100.0 34 ................................. AGCAACATCACCGACGGCAATGCTGGAAAGTCCA 109461 33 100.0 34 ................................. TCTACCTATCCGGGACTCGGCCCCACCAGATTAA 109394 33 100.0 33 ................................. CCTCTCGCGCCGCGCGGCATCCTCCGCCTCCAA 109328 33 100.0 35 ................................. AACGAACTCATGGCGGAACCTACATCCCGCGCCGA 109260 33 100.0 34 ................................. GAGTACATGTCCGGAGGAATACCGGTTGACGGTG 109193 33 100.0 35 ................................. AACGTTCCACATCTGCTCCTTGTAGGAAGCGATAT 109125 33 100.0 36 ................................. ACAATTCACACACATTGGCTACGTAATTGGCTATAA 109056 33 100.0 33 ................................. GTGATGATGCTCATGCCATCACCCCCAAGAGGG 108990 33 100.0 33 ................................. CAGAAGGATAGTGTTTGGTTTGAGGTCGCGGCG 108924 33 100.0 34 ................................. TCCTTAGTTTCTGTGTTATCGCGTCCTGGGTGAG 108857 33 100.0 32 ................................. GTTCGAGCTTAAGAAAACTTTCATCGGCAATT 108792 33 100.0 34 ................................. GACGACTATGGCGACGTCATCAGGCCGGCTGTCG 108725 33 100.0 33 ................................. ACCAACGTGGTGCTCGCCGAACAGATCGCGCAG 108659 33 100.0 35 ................................. CCGAAGTGCCGCCGATTCCGTCCAAGGATACGCCG 108591 33 100.0 35 ................................. TTTTGGACCGTTTGGTCGAGCGTTAGCGTTAGCCG 108523 33 100.0 33 ................................. AGGTAGGCTTCGCCATCCGTTCTGACGCCTATG 108457 33 100.0 34 ................................. CTGGATAATCTTCTCCCCGATAATCCGGCCATAC 108390 33 100.0 38 ................................. AGCCAGCTCGTCAACCCGCAGAATCCGATACCGGCCAA 108319 33 100.0 36 ................................. TTGATGGTGATCTCACCGAGCTTGCCGGTGGTGCCG 108250 33 100.0 33 ................................. ATCGTAATTATCGGAATTGCGCGGGGTTTCCAT 108184 33 100.0 34 ................................. TAGGTGTAACAGTGTATGCAGTGGTTTTTGGAGT 108117 33 97.0 35 ........T........................ GAGTTTGGGAAGCTCGTATCTGACGGCCTCGCTAT 108049 33 97.0 35 ....................T............ AACGGGGTAGTACTGAAATACTGCATGGCGCGGTG 107981 33 100.0 35 ................................. ATCGCCATGCAATCATCCGACTACCTCGCGGTCGG 107913 33 97.0 34 ......T.......................... ATCGACCATAATCAGTCTCCTTACCAGTAGAGGG 107846 33 97.0 0 .....................A........... | ========== ====== ====== ====== ================================= ====================================== ================== 48 33 99.8 34 GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Left flank : GTGTTCCGCTTCACGGAAGAGATGGATTGTGGTTGCCATATCCGATTGAATACAAACACGGCAAATCCAAAACGATTGATGCTGATCGTTTACAGCTATGCGCGGAAGCGATGTGCTTGGAAGAAATGCTCGCGTGTGATATTCCTGAAGGTGCTTTGTTCTATCAGCAGACAAAACGTCGTGAGCGGGTAAAATTTGACGAAGATCTTCGCAATATGGTCGAAGCTGACTTCTTGCAAATGCATGATCTTTTCTCCCGTGGATGGACTCCCAAAGTGAAACAGACCAGATCGTGTTCGTCATGTTCTCTACGGGATTTGTGCCTGCCTGAATTACGGAAGGCGAAATCGGCAAAAGCATATATCGAAGAACTGCTCAAGGAAAGCGGGGGAGTGATGAAGCAGCTGTTAAACACGTTGTTTGTGATGACAGAAGATGCCTATCTTGCCTTGGAGAACGATAATGTTGTGATTGGCCGTCATCGAGCTTGACGTAGACGA # Right flank : CGACCGGAGCGGGTGCGCGGCGGCGCTCTGGTGTGTTTCTGCAAGTTGGCATCCACAGTATAGGCACTATTTTTCAGCAGCATAGGCAGCTGGTCTCCAACAGAAACTGCGACGTCGGAATCCGCCACCCTTTTCTTCCTAGCTATCTGGTCATGAGGGCGTGCTCGCTACGGTAGGAGCCTCCCTCGAATCTGACGAGCCTTCCGTGGTGCACGGTGCGGTCGATCAACGCGGCGGCCATGTTCTTGTCGCCGAGCACGCGCCCCCAGCCGGAGAACTCGATGTTCATGATATGGGCCATGCTCCGGGTCTCGTAGGAATCCGATATGACCTGGAACAGGAACCTGGAACCCTCCTCGTCGATCGGCATGTAGCCGAACTCGTCGATGATCAGGAGCCTCGCCCTGGCGATCTGCCGGAGCTCCGCGTCGAGCCGGTCTTCCCGTTTCGCGCGGCGCAGCATCATAAGCAGCCCGGTCGCGGTGAAGAACCTGACAGGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTTACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //