Array 1 55892-56848 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZDY01000012.1 Staphylococcus agnetis strain SNUC 3261 contig012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 55892 36 100.0 30 .................................... ATGATGAAGATAACAAAATTGAATTAACGC 55958 36 100.0 30 .................................... TAACGTTTCTGTACCAACCTATGCCCGATG 56024 36 100.0 30 .................................... CTTTTTTTGCTTTTAATTGCGCAGGTGCGC 56090 36 100.0 30 .................................... ACAATGTACGTGGTATGCGTATGGTATACG 56156 36 100.0 30 .................................... TATTTTAAAGCTTTCTTTTGATATACTTCG 56222 36 100.0 30 .................................... TCTGGTGGAGATGTTGAAAAATCAGGAATT 56288 36 100.0 30 .................................... CCCGCCCGGTTCAGGTAAATCACTAGGAGT 56354 36 100.0 29 .................................... CAAATGATTCAATATTATAAAGAATCAAA 56419 36 100.0 30 .................................... ATATTCTTGTTTAAAGGGTTGGATAATCCA 56485 36 100.0 30 .................................... ATCCACCGACAATGATGTCGCATTTCCCTC 56551 36 100.0 30 .................................... TAACGATGACCGCACTATGACACTGATTTA 56617 36 100.0 30 .................................... GGACAATAAACCTGAGCCACTAACAGCACT 56683 36 100.0 29 .................................... TAGAATTGCACGTTTGGAAGAGAATGATG 56748 36 100.0 29 .................................... CCAAAAGAATCGGCGTTGTGGCGCAGAAA 56813 36 77.8 0 T........................G.TTT.AT..A | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.5 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Left flank : GACGTTCACGATGTACAATAACGCCATCTTCATTTTCTTTTTCATTATTTTCAGTGTGAGCTGCAGCTATAGTTAAAATGTTGTGGTCAAAATCAACGTGAATGTCTGATTTTGCCATACCTGGAAGTTCAGCGCTTACAACATATGCATCTTCACGTTCAGAAATATCTGTTTTAAAAGCTTGAGATTGCATTAAACCTTGCCCAAAATCTTTAAAAAGATCACTGGGATTCATATCAAAAATAGAATGATTAAATGGTTTTAATTGGAATGCCATAAAGCATCGCTCCTTCATATTTTAGAATGTCGCAAATATCAAGAAACTGAAATGGTAAAGATCACATCTAATCCTTTACAATCTTATTATACGACAAAGGTCAAAAATAGTCAAGGTCAAAGTATTGTGGTGGATGTAAATTAAAATTTATCCAAAATACGTAAAGATCAGTGATATCAATGGATTAGACAAACTTAAAAGTTATAGTATACTGTAGCTAGAG # Right flank : ATGTGCTATTTATGAAATATCTATATAAGCGATCCATTTATTTTAGCGATAACCTCATAAAATTGTTTAACTCAATGAAATAAATGTTATTTAGGTGGAAGTTATAACACTCACTCTATAAAAAATATCAGAAAATTCTTGACTCAAATGGATCTTATGATAAAATAAATTTACAAGTACTTATTTGTGCTTATACCTAAAATTACAGAATCTACTAAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGAATTTTTTTGTTCTTCTTTTATAATAGTATTTAAAAGGGAGGGCAATGTATAAATGAATAATTATATACTAGGACTCGATATAGGTATTGCCTCAGTGGGATACGGTATTGTAGATAGTGATACGCGTGAAATTAAAGATGCTGGGGTACGATTGTTTCCAGAAGCGAATGTAGATAATAATGAAGGAAGACGTAGTAAAAGGGGAGCGCGACGTTTAAAAAGAAGACGAATTCATAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //