Array 1 20825-22172 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZYL01000094.1 Pseudomonas aeruginosa strain ENV-227 PA2_C2_NODE_20_length_68725_cov_21.8963_ID_39, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 20825 28 100.0 32 ............................ ATCCGAAGGCGCCGGCAGTATGACACCCGCCA 20885 28 100.0 32 ............................ TGTACGCGACCCTTGGGAAGTACTCAAGGATC 20945 28 100.0 32 ............................ AGCTGATGCAGCATCGGCAGGTCCAACCCACC 21005 28 100.0 32 ............................ ATCCTCGCCCTGCTGGACGAGATCGACCAGCT 21065 28 100.0 32 ............................ CGGTCCTGCCAGTACTGCGGCAGGATCTGGTC 21125 28 100.0 32 ............................ AGCCTGGCGCCCTTCGAGTCCATCCAGCCCGG 21185 28 100.0 32 ............................ CATCCAATTCGCCGATCCGGCGCAAGCGCCCG 21245 28 100.0 32 ............................ ACGAAGCAGATCGCCGAATGCGGCGTCAGCGC 21305 28 100.0 32 ............................ GTGGGTGCAAATCGCGATTCTGGTCGCGTCGT 21365 28 100.0 32 ............................ TGAATATCAGCCTGCAAAGCGTCGTCGTAGTA 21425 28 100.0 32 ............................ AAGCCGGGCCGATGTTCGAGCCTGGCTGCGTG 21485 28 100.0 32 ............................ TGGACAATGCGCAGCCCAGGCGCTGGATTTAC 21545 28 100.0 32 ............................ ATGCGAGGCTGATCGAGGTGCGCGGTTCTGTT 21605 28 100.0 32 ............................ GTGCGCGGATGGCTGGTATCTCGAGCACGATT 21665 28 100.0 32 ............................ AGGCAAACAACGGAAAGATCACCACCGAAGGC 21725 28 100.0 32 ............................ AACGAAACAGGCCCAGCACAGCCGCTTGATAA 21785 28 100.0 32 ............................ ACAAGACGCTCATCGACGGCAGCATCGAGACG 21845 28 100.0 32 ............................ AAGGTGACGATGCACAGCTGTTGCGCGCGGTT 21905 28 100.0 32 ............................ ATCCTCGAACAGCCCGGGTTCGGTCGCCTCCA 21965 28 100.0 32 ............................ AGGAGTTTGCGGCCCCGCTCCCTGCGGCTCTC 22025 28 100.0 32 ............................ TTCACGGCGGGCTTGATGTCCGCGTCTACCTG 22085 28 100.0 32 ............................ TTGCCGAGTACGATGCCTGATACATGAATCCA 22145 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCAAAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 32171-30696 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZYL01000094.1 Pseudomonas aeruginosa strain ENV-227 PA2_C2_NODE_20_length_68725_cov_21.8963_ID_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 32170 28 100.0 32 ............................ AAGTGGCTGAACTCCGCCTCGGATTGGAGCGA 32110 28 100.0 32 ............................ ATGCAAGGCGCCAGTCTTTCCAGCAATCGCCA 32050 28 100.0 32 ............................ AGGCGCTGGGCTTCGGCATACTGCTCCGCGGC 31990 28 100.0 32 ............................ CACCGGGGTGGAAGTCATCGGCAACTCTATCC 31930 28 100.0 32 ............................ GCGAACTCCGAGACTGATGCGACGCGCCTCAG 31870 28 100.0 32 ............................ ACACATCACTGTTCTGCGGTACGTCGTGCCAT 31810 28 100.0 32 ............................ ATTGCAACGGCCCAATTAAGCGCTGCCCCCTC 31750 28 100.0 32 ............................ ATCCGGAGCCGGCGGCGAAGACTCCGCATTCC 31690 28 100.0 32 ............................ TCGATCTGGCTGATTGGCTGGGGCGAGAACAC 31630 28 100.0 33 ............................ CTGAACCTGTCGAAGCCTTGCCTAGGCACCACG 31569 28 100.0 32 ............................ AAGCAGATCCACGACTTCGTGAACGAGTGTGG 31509 28 100.0 32 ............................ ATCACCGGCGCGCTGGCCTTCGGCGCCCAGGC 31449 28 100.0 32 ............................ TTATCAGTAAATACGTGGCGACTTGGCCACCC 31389 28 100.0 32 ............................ TTGCTGCGTGTTGCAGCGACACCCGTTCAACA 31329 28 100.0 32 ............................ ACTGGAGATACGTGCACAGATCGGACGACACG 31269 28 100.0 32 ............................ ATATCAGTTTGCATGGTTTGCTCCTACCAAGC 31209 28 100.0 32 ............................ TTGCATCGCACCCTCCTGCTCACCGACCAGGC 31149 28 100.0 32 ............................ TGAACGTTCACGCATCACGCGCCTTTCCGGCC 31089 28 100.0 32 ............................ AGGCAGACGAGTACGCGCGGTCTCGCGAAGTG 31029 28 100.0 32 ............................ AGAACATGGCCCGGCTCCCGACGTTGCTGCGG 30969 28 100.0 32 ............................ ATGACGCAAGACGAGCTTGTCCGCCTTCTGGC 30909 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 30849 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 30789 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ACGGAT [30765] 30723 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 25 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAACACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGGGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //