Array 1 9617-10947 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBTC01000036.1 Lactococcus raffinolactis strain FAM 23217 FAM23217_scf0036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 9617 36 100.0 37 .................................... AAATGATACGGTTTTATTTATTTTATGCCCCTTTTAT 9690 36 100.0 36 .................................... TCGATTGTTTCGATTGTCATGTTGTTTTCTCCTTGT 9762 36 100.0 37 .................................... CGCTTACACCTTCACCATAGTATTCTATGATCTCTTT 9835 36 100.0 36 .................................... AGAAATACATTTGATTTCATTAGTTTACTCCTTTCT 9907 36 100.0 37 .................................... AAATACTGCTCCAACTCCTTATCCTTAGTCGTCAAAG 9980 36 100.0 38 .................................... TTCTTTCTACTATAGCATATGTAAAAGATGTGAAAAAA 10054 36 100.0 34 .................................... TCGTTTGTGATTCTTAATGTTTTAACACCGTACA 10124 36 100.0 36 .................................... CTATTTCGTTCAGAGAGAGCTATTCTCTTAAGAATA 10196 36 100.0 35 .................................... CTGTGCTATAATCTACTTATAGTAATTTTTAGTGA 10267 36 100.0 36 .................................... TTTGGAAAGTAAAGACTGGATTGCTACATCCCATAG 10339 36 100.0 35 .................................... TGACTGCTTTTTTTATTTTGTTTTCTTATCTTAAA 10410 36 100.0 35 .................................... AAAGGTCAAATTGCTATGTTTAAGCCTATAATGTT 10481 36 100.0 37 .................................... TAAAATACCCGAACGCCGTTATCCGCCCAAGCTTGGG 10554 36 100.0 35 .................................... ACATCATCATCAGAATAGGTTGTTATTGTTGTTTC 10625 36 100.0 36 .................................... TGCAAGATAATTTCTTAACGTGTTATATTCTCTATT 10697 36 100.0 36 .................................... TAATGTTTGATATGTTTTAAGTTTATCAAAAGTTTT 10769 36 100.0 36 .................................... TTTTTCAATTAGATTATATGTCATTTTATATTCCTC 10841 36 100.0 35 .................................... TGTAAGATATTTCACCGCTATCCCTGAGTTTAGTT 10912 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 19 36 100.0 36 AAATACAACCGCTCCTCGATAAAAGGGGACGAGAAC # Left flank : CTCTCCAAAGATGCAATCGCAGTTGATGATTTGGTGAAAAAAGAAATGGGACGCGAAATTGACAGTCGAATTATCTCGCTTAAATTTACAAGTCCAACCTCATTTAAAGCCAATGGGCATTATGACATTTTTCCAGATATTCGAAAAATTTTCCGTTCTTTAATGATGAATTTTGATTTTTTTAGTGAAACAACTAAAATTTATGATTACGAGGTTTTGTCGTACATTGAAGAAAATGTCCATATTGTCAGCTATAAATTGATGACAAAGAATTTTCATCTCGAGAAGATAAAAGTAAAAGGTTTTCAAGGTGACATGACGCTCAAAGTAACTGGTGCAGAACAGTTCGTAAAATTAGTCTTACTTATGATCAAATATGCGACTTTCGCAGGCATTGGTATGAAAACAAGCCTTGGTATGGGAGGAGTTTCCATCAATGAGAGACATTATCTACGTTGAAAATAGGTATTTTATCAGTAGTCGAGAAAATGCGCTCAGAT # Right flank : CCATATGATTCAGGTATTGCTTCTACACCAAGTTTTAAAGGGCACCTCTAATAATATTTGGAATACTTGGTTTTATATTTTCAATTACAGCTTTATGGCTAATAGGAAAAGAAACATATCAAACAAATAAAATAAAAAAATACACTAGTTATTATAACCCATAATGCCGTTGATTTTGATATTGGTTGTGTTAGTAAATCATCGAGGATCGGAATTCGACTACCAATTCCAAGTATCGCATCAATTATAATTAAGACATAAATAGTAATCAGAAATGGCATTCGTTTACGCTCAATTATGAATATTATTGTTGTGATAACTAATAAGATTAAGATAATACCAATTCCCCACCAACCTGGTATCCTAAAAGAAAGTGGTGTTTTAAAAAAAATACTCCCGATGATTAGGCTAACAAAAATTACAATACCAAAAGCATAATTGGCGGACCTATTGTTGCAATTGTATGTGGGGTCGGAACTTACTACTATATCATGAGAAAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATACAACCGCTCCTCGATAAAAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //