Array 1 8481-6866 **** Predicted by CRISPRDetect 2.4 *** >NZ_AIHK01000023.1 Escherichia coli DEC14A gecDEC14A.contig.22_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8480 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 8419 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 8358 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 8297 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 8236 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 8175 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 8114 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 8053 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 7992 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 7931 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 7870 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 7809 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 7748 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 7687 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 7626 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 7565 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 7504 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 7443 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 7382 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 7321 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 7260 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 7199 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 7138 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 7077 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 7016 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 6955 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 6894 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12929-11803 **** Predicted by CRISPRDetect 2.4 *** >NZ_AIHK01000022.1 Escherichia coli DEC14A gecDEC14A.contig.21_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 12928 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 12867 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 12806 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 12745 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 12684 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 12623 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 12562 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 12501 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 12440 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 12379 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 12318 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 12257 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 12196 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 12135 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 12075 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 12014 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 11953 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 11892 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 11831 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //