Array 1 185630-186878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMVQ010000001.1 Escherichia coli strain 18-47-96 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 185630 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 185691 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 185752 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 185813 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 185874 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 185935 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 185996 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 186057 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 186118 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 186179 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 186240 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 186301 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 186362 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 186423 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 186484 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 186545 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 186606 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 186667 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 186728 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 186789 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 186850 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 202378-203503 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFMVQ010000001.1 Escherichia coli strain 18-47-96 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 202378 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 202439 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 202500 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 202561 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 202622 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 202683 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 202744 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 202805 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 202866 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 202927 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 202988 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 203049 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 203110 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 203171 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 203231 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 203292 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 203353 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 203414 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 203475 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //