Array 1 60863-62167 **** Predicted by CRISPRDetect 2.4 *** >NZ_LTBE01000021.1 Corynebacterium striatum strain 2023 contig28_size62167, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 60863 29 96.6 33 ............................A CACGCCGAACTCGTGCGAGTCTGGTTCGCCGGG 60925 29 100.0 32 ............................. CATCCAGCGGTTAGATCGTGAAGTAGGGGAGC 60986 29 100.0 32 ............................. GGGAAAGTCGGTAATCATCGCGTAACTGATTA 61047 29 96.6 32 ............................A AGGACGGGGAACACAAGCTCAAATGGGCTTGG 61108 29 100.0 32 ............................. CTGCGCGGTCAGGGGCTTGTGGTTAGAGTTTT 61169 29 100.0 32 ............................. AAATCAAAGGATACATGATGGCATCCATCAAA 61230 29 96.6 32 ............................G GAACCCCAGGACCGGCACTTTGGTCAGATGGA 61291 29 100.0 32 ............................. TCGAAGTCACACAACACCTACTCCGAACTTGG 61352 29 100.0 31 ............................. GAGCGGCGCTGACATAAATTTTGCCGTGTTA 61412 29 100.0 32 ............................. AAAATCATCCGATTTACCGCCAACAATGGCAC 61473 28 86.2 31 ....CG...........-..........T CATCCCATGCTTTGCGCACGATTGCTTCGTG 61532 29 100.0 33 ............................. TCAAAGAAGGAGGACAAAATGGCAACACTATTT 61594 29 100.0 32 ............................. CACCCGCAAGGCCAAAATCAGTACCCCAGTGG 61655 29 96.6 32 ............................G ACTCGGCAGGATTAGAGTCCAGGAGCCGAGCC 61716 29 100.0 32 ............................. ACCCGTGGCGAACGCAATAAGCGTGATAGAGC 61777 29 96.6 31 ............................T CGCCGCGCCAGGTGAGGCGGCAAAGGAACTA 61837 28 96.6 32 ....................-........ GAGTGTGACCAATGCCTAACGCTTTTATTTGT 61897 29 100.0 32 ............................. GTGATTGTGCCTCCAATAGTCACAAATTTGGA 61958 29 96.6 32 ............................T TGGCGCAGTGACGACCGCGCGCTCGACCTCGC 62019 27 93.1 32 .....-...........-........... TGGTAGGACTGCGTCAGCTCGGTAGCTTCTTG 62078 29 100.0 32 ............................. CCAGACGCCGCGCCAGCGCGGGTGATAGTGCC 62139 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GTGGACAATAGCGCCGAGTCAATCGATGTAGAGCTGCTTTTGTGGAACGAACTTGAAAATATTGCGGCTGGTACTAATTGGTCAGACTTTGATCGGAGTTCTCCATGATGGTGCTCGTCGTTACTGCATGTCCCGCCGGCCTGCGCGGTGACCTTACTAAGTGGTTACTTGAGATTTCACCTGGGGTGTTTGTGGGTCGTCCATCAGGGCGCATTCGTGATCTGTTGTGGGAACGTTGCGTAAGTTTGTGCAAAGATGGCCGCGCTATTTTGGTTTTTAGCTCCGATAATGAGCAGGGGTTGGATTTTCGCGTTCATCGCCATGAGTGGGAGCCTGTGGATTTTGATGGTGTCACCCTCATGCGAAGAACCACTGCGCCATCAAAAGCTCAACGCCGTACCGGCTGGAGTGCTGCCCGAAATGCTCGCCGACACTGACCGTTACACCATAAGTCGGATCTGCTAGCCTCGTTTTTGGCTCTTCCACGCTGGTCAGTAAGT # Right flank : | # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 58472-59078 **** Predicted by CRISPRDetect 2.4 *** >NZ_LTBE01000023.1 Corynebacterium striatum strain 2023 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 58472 29 100.0 32 ............................. TTGCTAGTGTCTGGCTCGAAATACTTATTCGA 58533 29 100.0 32 ............................. GCTGACCCGCAAACCATCATCATCAACCCCGA 58594 28 96.6 32 ..................-.......... CTATGTGGGATGTCTTTGAACTCTGGTACGAG 58654 29 100.0 32 ............................. AAGCAAAAGAGTTGAGAAAGTCAGCTTTCCTA 58715 29 100.0 32 ............................. TAGGAGAACATAATGTCTGTACGCATGTTTGT 58776 28 96.6 32 ..................-.......... CAGCCACAGGAGTCATACAGGCCGGGGTGTGG 58836 29 79.3 1 .......................GCCCTG C Deletion [58866] 58864 29 100.0 32 ............................. CTGGACCCACTAGCCGATTTGGCAGAAACCCT 58926 29 100.0 34 ............................. ATGGGGCCAGGGCTGCCGCGGCCGTGGTGAGCTA 58989 29 100.0 32 ............................. TAAGCCTCACCTAACTCAGTGCTACCGCCTCC 59050 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================== ================== 11 29 97.2 29 CTCTTCTCCGCGCACGCGGAGGTATTTCC # Left flank : CTAAGGAAGCAACTACGCCGGGAGATCCATCGGAAGAACTTACTCGTCGACATGCTGGAAGTTCTCACAGAGGTACTCACGCCCCACTTACCTTCACGTGATGACGATCGACTCGTCTCTGGGCGCGGCGATGAAGTCGCCGGACACACACAATATGGACGGCGCTGAATGTTTCTTGTAATCACAACCACCAGCCTCCCAGACCACATGCATGGCTACCTTTCGCGTTTCCTTTCGGAAGTAGATACCGGTGTTTATGTAGGAAACGTTTCCCGTCGCGTCCGCGATAACCTGTGGCGACGGCTTTCCAATGCCATCGCGACGGCAGCCTAACCATGATCAACGAGGACCGGACCCGCGAACAGGGCTTTGCAGTCAACACTATGGGACCGCGACGCCGTACAATCATTGACATGGACGGCCTTTTACTTGCGTGCACGTTTTCGCGAGAACATACGCAAAACCGCACCGAGACAAACTAAAGTTGCTGTTCAGGAAGT # Right flank : TTTTTAACGCTTCGCTTGGGTTCAGACCGTCGTTGCACCACTTCTAGTACGGAGGTGTTGTTATGGCACAGCGTCCGCAGGGCACTTTTGTGTCGTTATCGGAGTCGGATAAGGAGCAGTTGCGGCGGTTAATTGCCGGTGGCTTGAGTCTGCGCGCAGCGGTGCAAGAGGTTGGGTGTAATTATCAGCATGCGTATTTCTTTGCCCATTGTGAGCAGTTGATTCCATATAGTCCGCGTGGTCATGATGCTCAGGCTCTTGCGGCGGGCATCGAACTGGTGAGAAAGGGTGTGCGTGTGCATACCGCGGCGCGTCAGGTTGGTGTCTCTGATCCAGTTTTGCGCCGCCAGGCGTGCAAGCTAGGTTTGTGCGTGCCGGTCAGTCAGCTGCAACGGCGGATTAATGCCACCGAGCAACGTGTTATTTTCCTGCGTCTGCGACTAGCGAGCTTGTCGACTCGTGATGCTGCTGTAGCTTGTGGTATCAGTTTCCGTAAGGCG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCACGCGGAGGTATTTCC # Alternate repeat : CTCTTCTCCGCGCACGCGAGGTATTTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 28288-28014 **** Predicted by CRISPRDetect 2.4 *** >NZ_LTBE01000028.1 Corynebacterium striatum strain 2023 contig34_size28371, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28287 29 100.0 32 ............................. ACGTCACGCGGCATAAAGCCTATTTCGTCCAA 28226 29 96.6 33 ............................G TGCACGGTTTGCCACGCGGCATGGGGCTAGTAG 28164 29 100.0 32 ............................. TTCCACCCGTAATAAGGTAGCGGGCTAGTCTC 28103 29 96.6 32 ............................G CCGGAGACCCGCGTAGCTGGCGTGCCGCCGCT 28042 29 93.1 0 ......................A....G. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 97.3 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GCGGGGATGAGCCCGGCGGCCTTATCGATACTAAGTAAGCGGGGATGAGCCCGGCGGCCTTATCGATACTAAGGGTAAGACTC # Right flank : TTCCATTCTGCTGTGGAAGGTACAGAAAGAAAGTCTGACCTGTGAAACGTGGGGATAAGATTTTTCTGTTAAGAAATACCCGTTTGCCCCACAGTTTTCCGCGGATTTGGAAGAGTGTTTTCTGCGGAACGTAGTTTTTAAAATCGGACCACACGGTCCCTACATCCTCATCACAAGATGCGAGCAATCCTCATTTACGCTTTTTCGCAGAGGAAGCGGATGACCTGGACGTACTCGAGTCTGTTGGAAGAAATGCAACATGGTGCTGGAGTGAAACCCTATACAGCGTCGAAGCGACGTTGGTTATCTTCGCATACATTGATGACGTCCATGTTGCTACTGGGCCAGTGGAAGATCATTGCTCTAGATCTTGAATTGAGTCACCGAGCGCTGCGCGAGGCGGGGTTGTGAGGATTAGCGGTCGGATGCTCAGTGTGGTTTTAGTAAATGTATTTATCTGCCTTGAAAGTTTGAGCCGTCCCAACTTTTAACCGCCAGGG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //