Array 1 5140552-5137254 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJYW01000001.1 Prosthecomicrobium hirschii strain 16 C1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5140551 37 100.0 37 ..................................... TCCTCCCAATCCTCCCAATCCTCCCATAAGAAATAAA 5140477 37 100.0 38 ..................................... GGAGCCTTGGCCGGTTTGGTGGTCGGCTGCATCGCCGC 5140402 37 100.0 36 ..................................... CCTTCTTGGCGTCGCCGACGGTGCCCATCTTGATCT 5140329 37 100.0 38 ..................................... ATCCACTGGCGGACGCGGCTCGCCGTCTTGAGCGTGGT 5140254 37 100.0 40 ..................................... ATGCACTGCGCGCCGGCACGATCAGCGTCGCCGATGCGAC 5140177 37 100.0 39 ..................................... GAATTATTCAGGTTTGAAAAAGCTGCTGCTCTATTTCGT 5140101 37 100.0 38 ..................................... GAACTGCTCTACGCCGTGCCGCAGGGCTACCGCTTGAA 5140026 37 100.0 36 ..................................... GGCTCCTCGACGCGCTGGATCGCCTGATCGAGCACG 5139953 37 100.0 36 ..................................... CGGTCCATACGGCGTGGGACCTTGGCGTCGGCGACG 5139880 37 100.0 37 ..................................... CCCGACATCAGGCCCAGGCCGAAGCCAAGCAGGGCAT 5139806 37 100.0 38 ..................................... TACTCTCAGAACGACGGGTCTGTGTAGCGCTCGCGCTC 5139731 37 100.0 39 ..................................... GTCGAAGACCTGCATTCCGCCGGCTCGCTGACGAACCAG 5139655 37 100.0 37 ..................................... GTCAGTTCACGAAGCCGCGCCATGACTTCCGGCGCGA 5139581 37 100.0 40 ..................................... TGAAACGGCGCGTTGCGCGCCCTGCCTGGAGCCCCTGAGA 5139504 37 100.0 37 ..................................... AGTTCGTCGTGGGTCGCCTTGAAGGCCTCGAAGGCTT 5139430 37 100.0 36 ..................................... ATGGGTGGCCGGTTTCTCCCGGCGGTCGAAGCCTAC 5139357 37 100.0 36 ..................................... CCGTCCGCCCGAAACGCCGCCGCAAGGAAATCCGTG 5139284 37 100.0 37 ..................................... ATCGGCGGCAACTGCAATCATGGCGAGTTTGCGCTTG 5139210 37 100.0 36 ..................................... TTTTCAGCTGCGAGCCAATACTGCAGATCACTGCTC 5139137 37 97.3 37 .....C............................... AGGCCGGCGATGCCACCGGAATGGTAGCGCGGCGCGC 5139063 37 97.3 37 .....C............................... ATTCAAGAAATACCGCCCGCATAGTCCCCGGAACCAC 5138989 37 97.3 19 .....C............................... CTGATATTCGGAATGAGAC Deletion [5138934] 5138933 37 78.4 36 TT....TTT..T.A....C.................. TTCAGGTGCTCGATGCGCTTGAGGTGGTCCCGAGGC T,G,AC [5138911,5138914,5138922] 5138856 37 100.0 37 ..................................... AGGAGCCGCTTTGCGGTCGACCGAGAGCCCGCCCCGG 5138782 37 100.0 37 ..................................... CCGCCATTAACCCCTTCATGACGGCGCGCTCGTGCTT 5138708 37 100.0 36 ..................................... CGCCGCATCCCGCTCGGACTCGGCCTTCTCGGCGTG 5138635 37 100.0 37 ..................................... TGGTCAGTCATGGGCGGGGTCCTCCGGGTTGGCGGTC 5138561 37 100.0 37 ..................................... GCACGTCGGATCCGAGATTGTGCACCTTCTCGGGCAT 5138487 37 100.0 39 ..................................... GGCTAGATTGAACCCTTCCATAGCGGCCTCACTGCACGG C [5138481] 5138410 37 100.0 41 ..................................... CTGCCCGGCCAGCAGGCCGCCTGATCGCAAGCCTCGTGCGC 5138332 37 100.0 41 ..................................... TCCGATCCCCAACAAGAATATCCTACCGGTTTCCAACTCAG 5138254 37 100.0 38 ..................................... TCGGCATAGGTGCCGCCAACACAGCTTGCGATGTCGAG 5138179 37 100.0 38 ..................................... GCGTCATCGGCGGCCGCACCATCTTTCGCACCACCGAC 5138104 37 100.0 36 ..................................... GTCTATGTCGGCGATGTCACCGTCGATGCCGACTGG 5138031 37 100.0 38 ..................................... TCCTTGCTGCAGAGGTGGCAAAAAATGCAGATCGCTAA 5137956 37 100.0 37 ..................................... CCGAAAAGCCATAATCCGGGCCGCGCGCACGACAAGG 5137882 37 100.0 38 ..................................... CGAGCATGGGTAGCTCCGGGGTTCGGGGCGCGGAGTGA 5137807 37 100.0 37 ..................................... TCGTAGAACGTCGCCGCGCGGGTGACCGTCGCAGCGG 5137733 37 100.0 36 ..................................... GTCTTCAGTTCGTCGAACGACCCCAATGCCTCCTGG 5137660 37 100.0 35 ..................................... GTCATTGTCGGGAGGCCAGAGTAGGTGACCGTCAT 5137588 37 100.0 38 ..................................... CGCTTGTCGCCGAACACCGCGACGATGTCGAGATCAGG 5137513 37 100.0 36 ..................................... ATGGTGACGCCGTGCTCGGCTTCGACATGCCTGCGC 5137440 37 94.6 36 T....C............................... GCGGTAGTTCTGCAGCTGGCTCAGCCAGGCAGCCGG 5137367 37 100.0 40 ..................................... TTGAATCGCATGTTCTCGGCGAGCGCGAGATAGAGCCGGA 5137290 37 86.5 0 .........A.C.....................CGA. | ========== ====== ====== ====== ===================================== ========================================= ================== 45 37 98.9 37 ACGACTCCCGGGCCAACAGCCCGGGCCTCATTGAAGC # Left flank : GCCGTCGTCATCTGACGGCCATCGCCGGCCGGACACGGCGCCGTCGGCCCCCCTGCCCCTGCCCCTGCCCCTGCGCCTGCCCCTGTTCCTGTTCCTGTTCCCGTCCCCGTTCCTGTCCCAGCGCCTGTTCCTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTGCTCCTGTTCCTGCTCCCGCGTCTGCCGCTGCTCCCGCGCGCCGCACGCACGCAGCAGGAGGCCCGCACGGCGCAGGAGGCCCGCAGGCTGCGAGCGTGCCGCCGGATGACGCGCCCGCGCGAAATGCGCTACCATCGCCGCCTCGGCGCGAGCGCTGCCGCGCGACAGATCTTCCGCCCAGCGCTCGCAGACCGGCCAACGCCTTGATTCCGGCGGGTTCTTTGTTATCGTGGATGAACCGGAACGTGGGCAAATCCATGCGCACCCGCATGCATCCGCGGACCCCTCGCAAACACCCCTGCAAGGCACTCGCCGGCCAGGGGAAATCCGGGGGGCC # Right flank : ACCGTGCCGTTAGCCCCGTCACGCTCCGGTTCAGGCGGCTGCCCGCGCGCCGCCCGGCGTCGCTCGTCGGCGCAATCCGGACGACCCGATGAAGAGGGCGATGACCAGGGCCGCCGCGAGGCAGAGCAGGCCGGCGGTCAGGAAGGCCGGCAGATAGGTTTCGTAGGCGGTGCGGGTCGCCCCGGCGGACCAGGCGGCTGAGGCCGCGCCGAGCTGGTGGCCGGTGAAGACCCAGCCGAAGACGATGTTCGAGCGTTCGCCGAAATGCTCGGCCGTCAGCTTGACGGTCGGCGGCACGGTGGCCACCCAGTCCAGGCCGTAGAAGACGGCGAAGATCGAGAGCGCATAGAAGCTGAAGTCGCTGAACGGCAGCCAGACCAGCGAGAGGCCGCGCAGGCTGTAGTACCAGAACAGGAGCCAGCGACTGTCATAGCGGTCCGACAGCCAGCCGGAGCCGACGGTGCCGAAGAAGTCGAACACCCCGATCACCGCCAGCATGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGACTCCCGGGCCAACAGCCCGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.50,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //