Array 1 3382-3104 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NYFO01000015.1 Listeria monocytogenes strain CFSAN049300 CFSAN049300_contig_0000015, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                             	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	============================================	==================================	==================
      3381	    44	 100.0	    34	............................................	CAGGCCATGTTTAATGCCTGTAGAGCACTTGAGA	
      3303	    44	  93.2	    34	....G........C..T...........................	CAGGCCATGTTTGAAAATTGTACTGGCCTTGGAG	
      3225	    44	 100.0	    32	............................................	GCTTACATGTTTGATGGATGTACTAGCCTTGA  	
      3149	    44	  90.9	     0	..A.....T.......T........C..................	|                                 	A,A [3143,3146]
==========	======	======	======	============================================	==================================	==================
         4	    44	  96.0	    34	AGCTTGATGTAAGTAACTTTGATACGAGTTCAGTAACTACTATG	                                  	       

# Left flank :   TAGAACGTTCAAATTTGTCTGGAGTGACGTCTTTTGAAATGGCATTTTATAGTCCAACACTTCAAAAAGTGATAATCAGAGACAATGATTATCCGACAGCACCATCTTTACGCACTACGGAGTATATGTTTGGTTATACTCACAAACTTACGGAGCTTGATGTGAGTGGTCTTGATACGAGTGCTGTAACTAATATGAATTGTATGTTTAACTACTGTAGCGTACTTGAGGAACTGGATGTAAGTAATTTTGATACCAGTTCCGTTACTACTATGAGGGACATGTTTGGTAGTAGTGGAAAATTGGAGAAGCTGGATGTAAGCAATTTTGATACCAGTTCAGTAACTACTATGCAGGCCATGTTTTATGGTTGTACTAGCCTTGAAGAGCTTGATGTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGTAATTTTGATACCAGTTCCGTTACTACTATGTATGGCACGTTTGTTGGCTGTAATAGTCTTGAAG
# Right flank :  GCTTACATGTTTCAAAATTGTACAGCGTTAAAATCTTTATATCTGGATAATTTTACTACCCCAAAGACTATGACAGGTATGTTTACTGGAACCACCGCCTTAACCTACTTGTTTGCCAGTCACAATTTAAGAGCTTTTGATGGCCTAGCAAATACAAGATGGTATGACGAAAAGAATTGGGTACAGTTTTCGAATTACAAGGAACTACAGATGTATCATGAATACCAAAGGGAACCTACTGGCTATAGAAAAGGTATCTTCCTTTCCCTAACAATGGATGCGATGGGTGGGCAGTTTGAAGAAATGGAAGAACAAAAAGTACAAAATAAAGTTTCTGGGGAGTACTGGGAAGAAATGCTTCCTGTAAAAGAAGGACATTATTTTGATGGGTGGTATCTTGATCAAAATTTCACTAATAAGTTTGATTTTTCTTTACCAGCAACTGTTTCAGCAACTATCTACGCAAAATGGGTAGAAAACTACACGGTGATTATTCCAGC

# Questionable array : NO	 Score: 2.66
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     AGCTTGATGTAAGTAACTTTGATACGAGTTCAGTAACTACTATG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:65.91%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [-1.60,-1.50] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [6-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,0.41   Confidence: LOW] 

# Array family : NA
//