Array 1 9253-11774 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIZQ01000005.1 Campylobacter geochelonis strain RC7, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 9253 36 100.0 29 .................................... TTATAAGGGCGGGGTTATAACTTAGGTTA 9318 36 100.0 30 .................................... CGTATGTAAAAGGTATATACTCATTTGTCT 9384 36 100.0 29 .................................... AGGAATTTAAGCCCTTTAGTGATAGCTAA 9449 36 100.0 29 .................................... GTTAAAAGCATTGCGCCTTTGAGCGTATT 9514 36 100.0 29 .................................... CATAATCAAGAAGATGAATTTAAAAGAAA 9579 36 100.0 29 .................................... TATCGCTTGACATTATATTATAAAAATGA 9644 36 100.0 30 .................................... ACAACTTTCTTTGCCATTTTTTACCCTTTA 9710 36 100.0 29 .................................... CGATAACCCCGAAATCGCAGAAATGATTA 9775 36 100.0 30 .................................... TAAAGGTTTTATATGAATTTCCAGAAAACG 9841 36 100.0 29 .................................... TAACACTTCCAGTAACGGAAGAAACTCCA 9906 36 100.0 28 .................................... TAATATTAACTATCAAAGAACCACCACT 9970 36 100.0 30 .................................... CTTAAATTTGGTGCAAAAGGCAAGGCAAGA 10036 36 100.0 29 .................................... TAAGAGAGTATGGAAACAAATAGGACATA 10101 36 100.0 29 .................................... TTATGTCAAAAGTACGAACAGGACAATAA 10166 36 100.0 30 .................................... GACTATTTAGCCATACTACACGTTTATTTG 10232 36 100.0 30 .................................... AAATAGTGATAAAAGAACTTGAAAACAAAA 10298 36 100.0 29 .................................... AGTTTTCAAACGCGATTCGAGCTTGTCAA 10363 36 100.0 29 .................................... ATAGGTTGTATGTAGTAGACACATTACTA 10428 36 100.0 30 .................................... TGATTTCTGATAATACAAACTACGAACCTA 10494 36 100.0 29 .................................... TTAAAATATATTTTATTATACTCAATTAA 10559 36 100.0 30 .................................... ATGTCTGCAAGTGCATTCAAACCTATCATT 10625 36 100.0 29 .................................... ACAATAGTAATGCTCCGCTACAGCTCCCT 10690 36 100.0 30 .................................... CAGGAGTCAATGGCAGAATTTTAAGCGATG 10756 36 100.0 30 .................................... ATAGTAACAGCTTTAAATATTCTGAAAGAA 10822 36 100.0 30 .................................... GAGATAAAGATAGAATGAATGTAAAAATCG 10888 36 100.0 30 .................................... CAAAGTTGAGTAAGGCAGCAAGTTTATTCA 10954 36 100.0 29 .................................... TAGTACTTAAAAATAGACTTAAGTTTTTA 11019 36 100.0 29 .................................... TAGTCTATTACATACAAGCCGTCTCCTGT 11084 36 100.0 30 .................................... TGAGTACAAAAGATGCTCTAGCAAAGCTTG 11150 36 100.0 30 .................................... TAAAAAATAAATATTGCACAATTGTAGCAT 11216 36 100.0 30 .................................... CTCTTATCATAGTTATTTAAGAAATTTATA 11282 36 100.0 30 .................................... ATGTCTGCAAGTGCATTCAAACCTATCATT 11348 36 100.0 29 .................................... ACGACAATGTTGAGGGCGTAAATGCTAAA 11413 36 100.0 30 .................................... ATATAATATTCATTTTTCTTTGAATCATAT 11479 36 100.0 28 .................................... ATCCTGATACAATAGGACAAATCCTGCA 11543 36 100.0 29 .................................... CAGCTTTAGTATATAATGATGAACCTACA 11608 36 100.0 30 .................................... CATATTTAGTTGAATTACCATCAACGTGTG 11674 36 100.0 29 .................................... TTAATAGAACAAAGCTAAAAGCGCCATTT 11739 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 39 36 100.0 29 GTTTTACTACCATTCAAATTTACACAACTCTCAAAC # Left flank : GCCATAGTTTGGTTTATGCCCTTTTTTATCAGGGAAAATCCAAATTTGAAGCAGTCTTAAAACCTCATCTGAGTTGTTATACTCACTATGAGTTATGCCAACTCCAGCACTTAGATACTGCACATCTCCTCGCCCGAGCGAGCGCTCGTTTCCCATGCTGTCTTTGTGAGTAAGAGTGCCGTTTATGACATAAGTTATGATTTCCATATCTTCGTGCGGATGCGTTCCAAATCCGCTTTTTGGGGCTATCGTGTCATCATTTATCACTCGAAGTACGCCAAAATGTATGTTTTGTGGGTTATAATATTGTGCAAAAGAGAAGTGAAACTTGCTTTGTAGCCAACCAAGGTTGCTTGAACCTAAATTTAAATGGTCAATTTTTCTTAACATTTTTATCCTTTTTGATGATTGTATATCAAAATGGTTAATAAATTTTATTACTTATATTTGCATTAAATAACTCTCGAACCCTTTTTTCATCACACATAAATAAAGAGTTT # Right flank : CCTCAAATCAAGAGTTTAGTAGACACAACCCTACTTAAATTATGATAGCAAACTATTAATTTTAACCATATTGACATAAAATTAATCTAAAACTATTTTAATTTCTAATCTCACAAAAATCCTTATCTATGATAACTATGTTTTCACACTCTAATCTTTCTTGATAAAATGGCTCTACTAAAAGTACATTAAATTGCCGCAAAATTATCTCATCGTATAGAAGCGACACTTCATCTTTGGTCAAAAGAGTTTTTAATCCAAAAAATACAAAAAGCTTAGTTTGTAAAAAATCGCGCTCTAAAATCATCAAATCTAAGATTTGCTCAAGCAAATTATCGCTTTTTATTATTTTAATATTTAAAGATTTTAAAACCGCTTCGATCTCAATATCATCATAACTTATAGGAAAGTCAACATTGCTTACAATCTTACTTGCAAATCGATTTAAAGCCATTAAAATTTTATGGCTTTCTTGATATAAATCCTTCAAAACCATCTCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACTACCATTCAAATTTACACAACTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 86307-83264 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIZQ01000005.1 Campylobacter geochelonis strain RC7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 86306 37 100.0 36 ..................................... AGAATTTGGCAATTTTTTTAAATTTTAATTTTACTA 86233 37 100.0 42 ..................................... TTTAAATCTGTAGAGCTAAAACTTTGTAATCTAAAGTCTATA 86154 37 100.0 44 ..................................... CGGTTTTGCTTAAACAATCTTACTTCTATACCATCGCTCAATAA 86073 37 100.0 40 ..................................... CGTCAGCTTTGCTTCTTTGACCACATCGTTCAAATTCCCG 85996 37 100.0 39 ..................................... CCATTCAAGACCTAAATACTCTAAATAGTATTTAATAGC 85920 37 100.0 39 ..................................... CTTATAGAGTATTCCTTAACTTTTTTTCCTAACTCTTTT 85844 37 100.0 42 ..................................... GCGAATCCTTGTTAGCCAATTGGTTGATGAGATGAACCTTCA 85765 37 100.0 37 ..................................... TATCTGAAAGATTCCCTAGTGGAAATCTTTACTTGTA 85691 37 100.0 35 ..................................... AACGAAGTATACCTCTTCGGGCTTACGCCCTTTAA 85619 37 100.0 42 ..................................... GACTAAGTGCGTATGACTCTCTTAGTAAGTCTTGGACAGCAT 85540 37 100.0 39 ..................................... CTCAATTTCAGCAAAACAGACATAGGCATCACTGCCTAT 85464 37 100.0 39 ..................................... TCGAATCCAGCGTGTATTGCCGTGGCTTCCGCCACCGAG 85388 37 100.0 35 ..................................... ATAAAAAACTGTCATGCTATTGCATGGTGTTGCTT 85316 37 100.0 41 ..................................... ACCTGATTCCTCTTTTAGCATTTTGGCTTCTTTGACCACAT 85238 37 100.0 41 ..................................... ACCTGATTCCTCTTTTAGCATTTTGGCTTCTTTGACCACAT 85160 37 100.0 42 ..................................... TATAGAAGTAGAAGAGTTCATCCCACTCTAACTCTTTCTCCT 85081 37 100.0 35 ..................................... TCAAATCTCCTATTCATTCTGAAATTTGCAGAGTT 85009 37 100.0 49 ..................................... TCTTTAAAGAAAATCCCTTTATATCTTATACTCTCATATGCCTTTTCAT 84923 37 97.3 48 .......T............................. GATGGTATAGTACCATCCCTCTTCAACGCATTCTTGGTATCCCTTTTC 84838 37 100.0 39 ..................................... AAAGAAGCTTTTCTGTACTCGTTTCCTTGAATATTTATA 84762 37 100.0 38 ..................................... TGTGTATGCCATGATTTTCTCCGATATAATGTACTAAC 84687 37 100.0 36 ..................................... TCATGAATGGCTGTGGCTTCCGCCACGCTCATGCCC 84614 37 100.0 39 ..................................... ATGATAGCTTCAACGCTATTGATACAAAGGTTGTTCACT 84538 37 100.0 41 ..................................... ATTTGTTACAAATAAATATTTGCCGTTATGATAGGCATATT 84460 37 100.0 40 ..................................... CAAATTTGTGCAAAACAGACGTAGGCATCACTGCCTATGT 84383 37 100.0 39 ..................................... AGCTTCGCTTTGTTAGCCACTGCAGTGGCAACTTGTTTA 84307 37 100.0 46 ..................................... CTTTTATACTACTTCTCATTTTTTATCCTTTATATATATATATATA 84224 37 97.3 43 .................A................... TGCTGTCGCTACTTGTTTCTCGGTCAGTTCCATCTCAGACAGG 84144 37 97.3 37 .................A................... CCACATATTTTTTAAAATCAATTTAAACTTAAATCCA 84070 37 100.0 43 ..................................... TTGTACTCTTTTTCAAAATAAATTTTTTCCATTTTTTGTTCCT 83990 37 100.0 41 ..................................... CATTATGTATCCTTTATAAGTATTAAAGCATTAGCTAGTGT 83912 37 100.0 43 ..................................... AAATCTTTACTTGTAGGGAATACTCCCTAATATCACGTTCTCT 83832 37 100.0 42 ..................................... TTCATGATAGTCTCTATGCTATTTATGCACAAATTATTTATC 83753 37 100.0 36 ..................................... ACGAATTCAAGTCTGTCATTGCGGCTTACGCCGCTA 83680 37 100.0 41 ..................................... ATTATATTCTCTGTTCTCCAGTTTTGACATTTTCGTATAGA 83602 37 100.0 37 ..................................... GCTTTCACAAACTCTAGCCTGTCGTTGCGGCTTACGC 83528 37 100.0 40 ..................................... AATATTATTACTCTATTTCCTACTGTTCTTGTTTTTAACT 83451 37 97.3 40 .................A................... CAGCTCCCATTCGACGAAGTTCATCGAATTCCTCAATTGA 83374 37 97.3 37 .................A................... TTTGTTCTCAACGATTTCGTCAAGCTCATTTATTATA 83300 37 94.6 0 ..................................G.T | ========== ====== ====== ====== ===================================== ================================================= ================== 40 37 99.5 40 GTTTAGACACTTTCTCCGATTATTAGGGGATTGAAAC # Left flank : TATAAATTTTTAAACACGGTTTTTATTTTTGGTTCCGCCATAATTTCAATATATTTTTAACAAATTTAGCACTTTAGAGTTTCTAACTTTTTATATTTTAAAACTCCTAAATTTAGAGCTTTTTGGTTTTTTGCTCTTTTAAAAAAGTTAGAAACTCAATAAATTTAGCATTTTTAAAAACACACTTTCTAACTTTTATAATTATTTAAATTTTAAAAGCCCATTTTTGCGGTATTTTAAAACTTAGATTTTTCTTAAATTTGGAAACTATACGCAGTTTAAAAATTTCCCCATTCGACTTTCTAAATTTTTAAATCTCAAAAACCACCATTTTACCGATACTTTAAGGACAAATTTAGCAAAACTATCGATTTATACATTTTAAAAATCAATAGAGTTTCGAATAAATTCGCTCGAATTCAGCTCTCACAGGCTTTTGCTTAAAGAATTTATAATCATTAAAAAAGTATAATCATCTTGCAAATAACTAAATTTGCAGT # Right flank : AGAATTTGTATATAGGTAGCAGGTTTTATAAAAATTTAGCTTTAGCCAAATAAAAAAGAGGTATAATTAAATTTAAATTATAAAACTTGGAGAAGATATGGGCGAATTTTTTATGTCTGCTATAACTTATATGGACTATGTTACTATTATCTTTGCTTTTGCGACGATGTTTGCTGTTTTTTGGCAGTGGTATTTCAGAAGAAAAGACAATAACGAAATAACAATTTATATAGATAAAGATGGCGAAAAAAACGAGCTTCCTATCAAAATTTTGCGTAAAAATATCTCTCGCGCTGAGGTATTTGGCATTTTAGGGGCTTTGCATACTGGTCAACAATGGTCGATAAAATACACTTCAACAGTAGAATTTATGCAAGATATTTTACAAATTCAACTGTATAAAAAAGATTTTTTAGAGATAAAACTAACAAGCAATGACAACTTCCAAACAGATATCGACTACTTATAAAAACACCTTTTATAAAATCAAATTAAAATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGACACTTTCTCCGATTATTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 229704-224551 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIZQ01000002.1 Campylobacter geochelonis strain RC7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 229703 30 100.0 36 .............................. TTGACTCTGGAAGAACTTTTAAAACAATCATCAAAG 229637 30 100.0 36 .............................. CTAATTTTTTCTACCAAAGTTGGCGTAATTGTTATA 229571 30 100.0 35 .............................. TTTGGCATAGCCTTAAATCTCTTTGGCTTAGCTCC 229506 30 100.0 36 .............................. AATGATGAAACGCTTTTATCTATAAAAAACTCTGAA 229440 30 100.0 36 .............................. TGTAGTTCTTAAAACAGTATTTCCATCCCCTTCTAA 229374 30 100.0 37 .............................. CCTTTATTAAGTTTGTTATACTCGACAAAAAATATCT 229307 30 100.0 37 .............................. TTTTAGTGAGGCGTTATAGCCTGTTATGTTTGTAGCG 229240 30 100.0 37 .............................. CTAAGTAAAGGCTTGTAACTTTTTGCTGTTTTTCCTA 229173 30 100.0 35 .............................. CACCCTCAAGCGTGTTTTTTACGCCGCCATCCCAG 229108 30 100.0 34 .............................. CGCACTCTTTTACCAGTTCCAAAGGCTTGAATCT 229044 30 100.0 36 .............................. TCAAATTCCTCATATCTGTCCTGTATAAAGGACAAA 228978 30 100.0 37 .............................. TTAGATAAAATATAGCTTTGAGCATATACTTCATCTT 228911 30 100.0 37 .............................. CGATAGATTTAGTTTTAGATGCATGGGATTTAATAAC 228844 30 100.0 35 .............................. TCTTTTCCGCTACTATAGTAGCGTTGGCTTTCGTA 228779 30 100.0 35 .............................. CGCAAATTTATATAAGATAAAAAAGAACCTAATTT 228714 30 100.0 42 .............................. TGTTTTATCATTAAATATCAACGCCCCTTTAATGGTGTTACA 228642 30 100.0 35 .............................. TTGTTACGTGCAGTTGGATTTGTAGAAATTCTTTC 228577 30 100.0 35 .............................. TTAGCAATCTTATAATAGCTCTCTGTACCTACATA 228512 30 100.0 36 .............................. ATTCCTGCTTGGGTAAGTTCGTGGCTGGAAAATTAT 228446 30 100.0 36 .............................. CTACTTCCTATTTTAGCAAACAGCTTTGATGTAAGC 228380 30 100.0 35 .............................. AACATATCAGTTAGCACCCCCATCTGCTCATCAGG 228315 30 100.0 36 .............................. TCTTTAAATTTAACATCAACAATTATTTTTTTATTA 228249 30 100.0 35 .............................. ACTATATAAACCACAATGCCTAAGAATGTAGACCA 228184 30 100.0 36 .............................. GTCGGTAGCAGAAAACTTTTTGTTTGGAATGGATTT 228118 30 100.0 35 .............................. GCTTTTGCCAAAAGATAGAGCGGATCTAAAGCACT 228053 30 100.0 36 .............................. TAAAGCTTTAATGTTTTACTACCTTGAATGCGAAAA 227987 30 100.0 38 .............................. GATGCATACATATCACGAGAGCCATATCCTTTGTTATA 227919 30 100.0 37 .............................. TAGTCTCTTTTTCTTCTACTATATTTGGGAAAATTAC 227852 30 100.0 36 .............................. AGTTTCATTTAGTGTTCTTATATAACCTTGAAGTCT 227786 30 100.0 36 .............................. TCTTTAAAGATACCAGTTAGCACTCCAAGTTGTTTG 227720 30 100.0 35 .............................. TTTAGATTGATATTTACAGGCATGCTTCCGCCACC 227655 30 100.0 36 .............................. ACTGGCTACAAACTCAACTATCGCAAAAAGAACAAA 227589 30 100.0 36 .............................. AATCCATCTAAGCTTCCATTTGCCTTTTTAATACTA 227523 30 100.0 35 .............................. AACTTTACCACAAGCCCCACTACCAACACAACCTT 227458 30 100.0 35 .............................. CTAGAAACTAAATCAATATCAAGTCCTAAAGTAGC 227393 30 100.0 37 .............................. CAATATAGTATAAAAGCAGATGGTGCAACGCTAAATA 227326 30 100.0 34 .............................. GTGTGTAAAGAAATCTTGATTTTCATCTAAGCTT 227262 30 100.0 35 .............................. TTTAGTTTTGAAAATCAGTATCTTAGATTTTCTTA 227197 30 100.0 36 .............................. TCCAAAAGTTAATAGCTTGACTAAATATCTCACTCC 227131 30 100.0 35 .............................. CGTTAGTAAGGTCGGGTATGGGATACCTGTGAATT 227066 30 100.0 35 .............................. CTCTCTAGTTGCTAAGACAACGCTTTCATCTACCT 227001 30 100.0 35 .............................. CCTACTGCAAAAGATGTTAAATTAATTGGCTTTTT 226936 30 100.0 36 .............................. AGATATTATAATTTTGAACACATTTCATCTTATATG 226870 30 100.0 36 .............................. TAGATTGCTATAATCTCTAAAGCATCGTTCTTAAAA 226804 30 96.7 34 .....A........................ TCAATTTCGCCTTTTATGATAATAATTTGATTTA 226740 30 96.7 35 .....A........................ TCTTTAAGTCGGCTATCATCGATTAAAATCGGTAT 226675 30 100.0 36 .............................. TATTGTTTTTTTATTTGAGTCTCGCTTTTGCTTTTT 226609 30 100.0 36 .............................. ATATTATCTCTCCTACTAGAGAGGTAAAATATACCG 226543 30 100.0 37 .............................. TATCCTAGCCAAAGTTCTAACTCGTCCCCAAAATCAG 226476 30 100.0 36 .............................. TATTCTTGTCAATTCTTTGTCTATTTCGCTAAATCT 226410 30 100.0 36 .............................. TATGTAGTGTTAATAATCGCGCTTGAGTTATCTGGA 226344 30 100.0 36 .............................. AATAGATAAACAACTTGAAGATGAACTAGTTGAAAA 226278 30 100.0 36 .............................. CTATAGTTTGATAATACCAGTGCATTTCTGAAATAC 226212 30 100.0 35 .............................. CGTAAAAATTGTATAACAAACTGTATAACTTTTTG 226147 30 100.0 23 .............................. CTTAACACCCTAAAAAACAAAAA Deletion [226095] 226094 30 96.7 37 ......T....................... TGGTATGGAAATCCAAGCACTGCTTCTAAACACTCTA 226027 30 100.0 36 .............................. TTATCTTCTACTTCTATACCTTCAATATCTGAGCTA 225961 30 100.0 36 .............................. TTGCTAAAAAAATAGCAAACAAAGCCGTAATTGGCA 225895 30 100.0 36 .............................. TTTCGAGTTAATCCATCTTTAAAAGTGGATAAGAAA 225829 30 100.0 37 .............................. AACCAAAATTTTAAACCTTGCAGTTTTGGATAGATTA 225762 30 100.0 36 .............................. AATAATATGTTTGAGCTAGATGAAGAAACGTATGAG 225696 30 100.0 34 .............................. TTTAAAAAATTTAGGTTCTTTGGGAATCAAAGAC 225632 30 100.0 36 .............................. TTTCCAACACTTACACAATTTACTCTATTTGCAACT 225566 30 100.0 37 .............................. ATAGGCGGTTTATTTATACCGCTAAACCATAAAGATA 225499 30 100.0 36 .............................. GCTGGCATTTTATTAAAATTAGTCACAAAATCTTTT 225433 30 100.0 36 .............................. TAGTGTTTATAAACCAAATTATCCAGCCTATCGCCA 225367 30 100.0 36 .............................. TTTTAGTTACAACGAGATTATGGGGCTAGAAAAGGC 225301 30 100.0 36 .............................. AACTCTACAAGCAAAACTTTTCCTTATTTTTTTGCG 225235 30 100.0 36 .............................. AGAACAAAATGGATTATTTTTACAGAAATTTAATTA 225169 30 100.0 36 .............................. TTACCAATAGCACCAGCAGAAGCACCATTTAAATAT 225103 30 100.0 36 .............................. TCAAGCATACCATCTATATCAACAGTAGTATAATCA 225037 30 96.7 34 .........................A.... AATATAGGTTCAAACCAAGTTTCATTTAGTGTTC 224973 30 100.0 35 .............................. CAGTCTAGTCCTAAGACTTTAATTAATGAAGATCA 224908 30 100.0 36 .............................. TTGAACTTAGATACCATAGAGGGGCTAATCCTAAAA 224842 30 100.0 36 .............................. GCTGGAACTCTTTGTCCTACTTCAAATTTAACCATT 224776 30 100.0 35 .............................. TATATTTATGATGGTGATTTGTGCTTTATAGAATT 224711 30 100.0 35 .............................. TGTATATGTGCATTCCCATATACCTGTGCGTTGTC 224646 30 100.0 36 .............................. GTATATGTTACAGCGGCTTTGATATAGTATCTATCG 224580 30 93.3 0 .....C..................C..... | ========== ====== ====== ====== ============================== ========================================== ================== 79 30 99.7 36 ATTTTGCTTGAACAAATTTTGTATTGAAAC # Left flank : AGGCGTGTTACAAAGGTTTTTAAGGTGTGTAAGAAGTATTTTTTACATCATCAAAAATCAGTTTTTAAAGGCGAGATTACACCATCGAATTTTATAAAATTTAAAGCCGAAATAGAAAAAATAATAGATAAAAATATCGATTTTGTTAGCATAATACGACTTGTAAGACAAAGCGATGTGGATGAAATTAGCATAGGTGGAATGGCTTTTGATAAAAATGATATGTTTTTGTAATTTTATTCTTAATTTTGCTTAAAATTTCTTTTGTTTTATAATTTATTTTTATACTTTTTTAGTTAAATTTCAAAAAAAGATTGCTTAAGATTTTTCCAACTGAATTTTTGATAAAATATCTATAAAGGTCTATAATTCGAACCTTTGAGCTCTTTAACTTGTCATTGTTAAAAATTTAAATAAAGGCTGGAAAAATTATCATTATCTCTCCTAATTTTGGTAGTTTTATGGTATTTTGATGTTTTTAGGATATAATAATTATCGTT # Right flank : GATATAAAAACCATAAAAACAAAAACACAAAACCAACCGCCACTTCGCAAAATCATCTTGTTAATATAACTTTAATCTTTTATCGCTAAAATTTACAATTATTTTTATTTAAGGAGATTTATGTATCTATTTACTTCTGAAGTTGTAAGTCCGGGTCACCCAGATAAATGCGCTGATATTATCGCTGATAGCATAGTTGATGCGGTTTTGATGGAGGATAAGGATGCTAGAGTGGCGAGTGAGGTCTTTGTCGCAGGCAAGCATATCGTCATTGGCGGCGAGGTAAAAACAAATGCAGAATTTAGTTTTAAAAGGTTTGAGGCCATCGTAAAAGAGGCTCTTAGACACATAGGATACAACGGAAACCCAAATTTTACAAAAGAGCAATGTTTGCATCCAGATGACATCGAAGTTCATGTGCTTTTAAACAAGCAAAGTTCAGATATCAACCAAGGCGTTGATCAAGATGATGGCGAGATAGGAGCAGGAGATCAAGGCAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGCTTGAACAAATTTTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 112969-113326 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIZQ01000008.1 Campylobacter geochelonis strain RC7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 112969 30 90.0 35 C....................A...A.... GTCATGATTACATATGTTCCATCTTCATCTAAAAC 113034 30 100.0 35 .............................. TATCTTTTAATAATCTCAAGAACTTTAGCCTTATC 113099 30 100.0 36 .............................. CGCCTAGCGAGGCAATTTCTATAATACCTGCTAGTT 113165 30 100.0 36 .............................. GTGCCTTTGGCTACTATATCTTGCAAATTAATAAGA 113231 30 100.0 36 .............................. AGTGAAGCGAAGCGGAAGGCAGTAGAAATACTGATG 113297 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 98.3 36 ATTTTGCTTGAACAAATTTTGTATTGAAAC # Left flank : TAATAAAACAAATCTATCATCTCCTAAACTTATGATTCCAGAATGCCCTTGTGCTGGTTGAGCGCTAAAAGGATACATCACGCCAGTTGGTCTGCCATTTGACATGCCCTCAAAGGATTCTAGTCTATCGGTTCGCTTTGTTTTTTCAAATTTACCATTTGTGCGAAGCAACTCTGGTGCATCATCTGGGACGTTTATAAACGAAGCAGCTGGCAAAATAGCGTGCCCTGCTAATGTGGCGCTAAATTTTTGCGCAGCTAAAAGCTGTGAACCAACTAAGATAAAAGCTACAAAAAAGCTAAATTTTTTCATGTTTCCTCCTGTAATTTTAAGAGAATACTACAGATTAAAAATAACTTTATAGAAACATTTTAATACTTTAATTATTTTTATAATATAAACATAGATGAAATTTAAGATAATAAGATGTTTTTGTTGCTTTGTAGCTAAATTTTGCATTAAAAATCTTTAAGTAGACTATAAAAACAGATTTATAAAAT # Right flank : TTGTTTGGTGATAAGAAAATTTAGACATTTAACCTATAAAATTTCCGTGCTATAAGGAAAAATTTAGATAAATTCTAAAAACTTATCTAAATTTATTTTTTATCTATAAAATTCCGCACTCTCTTTTTAATACAAATTACATAAATATTTATTATAATATAAACAGATTATTAAATTTGGCTCAAGACAAGTTAAAAACTTTTAAAGGGGTTTTTAACTACTATGCTATCGATGAAAAACAAATACATATACCGTT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGCTTGAACAAATTTTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //