Array 1 210575-208715 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVK01000006.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5437 NODE_6_length_367053_cov_69.100584, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 210574 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 210513 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 210452 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 210391 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 210330 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 210269 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 210208 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 210147 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 210086 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 210025 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 209964 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 209903 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 209842 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 209781 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 209720 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 209659 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 209598 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 209537 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 209476 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 209415 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 209354 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 209293 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 209232 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 209171 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 209110 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 209049 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 208988 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 208927 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 208866 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 208805 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 208744 29 96.6 0 ............T................ | A [208717] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 229127-227147 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSVK01000006.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5437 NODE_6_length_367053_cov_69.100584, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 229126 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 229065 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 229004 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 228943 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 228882 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 228821 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 228760 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 228699 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 228638 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 228577 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 228516 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 228455 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 228394 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 228333 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 228272 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 228211 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 228150 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 228089 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 228028 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 227967 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 227906 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 227845 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 227784 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 227723 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 227662 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 227601 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 227540 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 227479 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 227418 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 227357 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 227296 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 227235 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 227174 28 93.1 0 ............T............-... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //