Array 1 264-826 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZJ010000035.1 Listeria farberi strain FSL L7-0091 NODE_35_length_5989_cov_35.464858, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 264 36 100.0 30 .................................... AACGCCAGCACTAATAAGTAATCAGCTGAA 330 36 100.0 30 .................................... TTGCGCCTAACGTGGTGTTGCACAGCTTCG 396 36 100.0 30 .................................... GTCATGGATAGTATTTATTTCCCGCGAGGC 462 36 100.0 30 .................................... CGAGGTCTGTTTGCTATCTCACGCCAGTGA 528 36 100.0 30 .................................... TGGGACTAGGATTTACTCTATCAGCTTCAC 594 36 100.0 30 .................................... TTGCGCCTAACGTGGTGTTGCACAGCTTCG 660 36 100.0 30 .................................... AGAAATTTGTATAAAATATTGTCCAATGTG 726 36 97.2 30 .........................A.......... AGAGAGGATGAACTCTAAATAATCGGAAAT 792 35 86.1 0 ..............C.....C....A....-...C. | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 98.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : ATGAGTTACTAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGTAGAAGGATTTTCGCAAGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAAAGGAATATAAATTTCAAATGATCTTTGAAAACTAAATAGATTTTATATGAACCATAAAATAAGTATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACGAGG # Right flank : CACATCTCTCAATCTACTCCAGCTAGAAAGAGTTACACCATTATGAAAGAGGGACTCCAAACATTTTAACCCAACCTGCAATTTCCAACTCGCTATAAGTGAAGGGAAATTACCGTTAAAAGGCGAAGAGCAAAAGAATGATTAGGAATCTAAAAGTTTGAAAATACTACACGATTACATTATAAAAGCTAGTAAAGAAAGCAATACCTTTGAACTATACACTTCATGGAACGGCGAAGAAAACTTACCTTTGACGAATAAAACAGAATTAGCCATAGAAATTTTAACACCAGAAAAGTTGGTTTTAAGAGACAGAGAACTATTAATAATTAAAAATAAGACATTTACATACAGCACTTAAAATAAAAAGGAGAAACCTTATGAAAAAAACCTCAATCATTTTTATTTTATGTATAACCGTAGTACTAACAGGATGCTCCACCGCCGAAAAACAAACAAAAATAGAATATACAGAAGCAACAGGGACAATAGAGCAAGTA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 60473-60824 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZJ010000014.1 Listeria farberi strain FSL L7-0091 NODE_14_length_83009_cov_40.903960, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 60473 29 100.0 35 ............................. GTTGTTTGGTCTACATCGAAAAGAGCGTGTGTTTC 60537 29 100.0 35 ............................. ACAAAATGGAAATTCATTCAACAGTCGCGTTTGAT 60601 29 100.0 36 ............................. TGCGTGAACATGACTCCCTTAACATGTGCAAACACC 60666 29 100.0 37 ............................. CAAGTTGAAGATATAAACTACATTCAGACAGTTAAAA 60732 29 100.0 35 ............................. GATATATCAATCTTTAATTTTTTAACTTCCATTTT 60796 29 93.1 0 TG........................... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 98.9 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : TGCCACAACTTCAGCTGACATTTTACTTGAAAAAGGGGCAGTAGAAGTAATCGCGTGCGCAACCCATTCAGTCATGGCTGGAGACGCGACTGAACGTTTGCAAAACTCAAGAATCAAAGAAGTTATTACATCCGACTCTATCGACCTTCCAGAAGAAAAACAATTCGAAAAACTAACCACGATTTCCATTGGACGCATCCTAGGCCGCGCAATCGAAGGCGTCCAAGAAAACCGTTCATTGCATCCGTTATTTTAAATATTAAACTTAAAAACAGTAACTTAGCATAGTGCTGTTTTTTTGTTTTTAGTAATCTGTCGACCAGCAGTAACGTAAAAAACACCGAAGACCGACAGAAAGTTGTGAATGCTTGGAGGAAGCAGAGTTTGGAGATATTTGCTTTGAAAAAGTATGCTGGCAAAAGTAGATTTCATCTGATTTTGAACAGGTCGACAGAAACAGCCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTGCACGG # Right flank : TGTAGGAAGCGGCTTTAAAGAAATTATTAAATAATCTGGAGGACATTTTCATGAAAAAAGTTTTAATGCCACTTATGCTACTCGCAGTTTTATTATATGGTTGTTCATCACAAAACGAAGGGGTAACGAAAGAAACTGCCATTTCGAAGACGATCTCTATACGAGCGGACTACACTATTCCAGCAAATTTGGAGGAACTAACAGCGAGCAGTGATTCTATTGTTAAAGTGAAATTTCTACAGAATAAAGACATCGGTAAAAATGGAAGTACAATTAGTGAAGTAGAGATTTTAAAAAACTACAAAGGTAATTTTAAAAAGGGCGAGAAAATAGATATCTCGGAACCGTGGTATTTAAGTGATGATAAATATGTCGCGGTTGAAAACTATATTGCGCTTGAAAAAAATAAAGAATATACCTTGTTTCTTAACGAAAGCGACGATAAAGTAAGTTCTATAGTTAGCATGGGTTACGGTAAATTCAGTGAAAATCTCCAAGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 74108-75234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZJ010000014.1 Listeria farberi strain FSL L7-0091 NODE_14_length_83009_cov_40.903960, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 74108 29 100.0 36 ............................. GCCTCTAAGTCAATGAATGGAATAATATACTTACGT 74173 29 100.0 35 ............................. AAACTTTGCTTTTTCCAGATCAGCGGATAACTAAA 74237 29 100.0 34 ............................. ATTTTGGCAGGTTTGAAGGTACGACAGATATCGA 74300 29 100.0 35 ............................. TATTTCTTGATATGCTCACACTGCCATGCGACAGC 74364 29 96.6 35 .......................A..... GAGTATCAAGAATACATCACAGAAGAAACAATAAT 74428 29 100.0 36 ............................. TCTGGAAATTCTGGCCGTGTCGGCCCGGAAGATATT 74493 29 100.0 35 ............................. CAAAGGGTCTGCTCACAGTCGTAATCTGTAAACAG 74557 29 100.0 35 ............................. ACGTTTATATCATCTATAGTCATAGTCACCCCGTC 74621 29 100.0 35 ............................. CCTGCTGTGCTTCCATCGGCATACGTGTAACGCCC 74685 29 100.0 37 ............................. AATGGTTTTCCAGATTTATTTGGTTTTCGTGGGACAG 74751 29 100.0 38 ............................. AGAAATATACCACCAGCAGTTGTTGAAGATGCTATATC 74818 29 100.0 36 ............................. GAAGAATATTCTTTCCCGCGCACTAAAGTTCCGTTT 74883 29 100.0 37 ............................. TAGCGACGAGATCAATAACATCATCCACCGCGGCACG 74949 29 100.0 34 ............................. TTGTCACTTAATCGTATTCTTTCTGTGATGTATT 75012 29 100.0 35 ............................. AATATGAATAGAGATTCAGCATCATTGCTAAATAA 75076 29 100.0 37 ............................. TCAGTTGTTGAAGATGCTATATCCAATGGTGTTAAGA 75142 29 96.6 34 ............C................ AGTGTAAGCACAGCAATTCAGACAGCTATAATCT 75205 29 93.1 0 .......................A....C | C [75228] ========== ====== ====== ====== ============================= ====================================== ================== 18 29 99.2 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGCGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTTTTAAAATCTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCTGGCAAGCCCTGCTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAACGTCTTCGATGCGAGTTTGGTATTTGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAAGTTAAAATAAATGCTAAAATGGTCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6169-5100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZJ010000034.1 Listeria farberi strain FSL L7-0091 NODE_34_length_6431_cov_18.897525, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================================= ================== 6168 36 94.4 30 ................A............A...... GGATTATATCCCACCATCGAACCTCCTCAT 6102 36 97.2 30 ................A................... TTATTACTAGATTTCTTATGGCACACGGAA 6036 36 100.0 30 .................................... CATTGCTTCTTGTAATTTTCCGGATGCGCC 5970 36 100.0 30 .................................... CATTGCTTCTTGTAATTTTCCGGATGCGCC 5904 36 100.0 30 .................................... CGATTGCCAACTATCATAACCAACAAAAAC 5838 36 100.0 30 .................................... GACAAGAGTTATTCGAAAAATGCTGGAAGA 5772 36 100.0 30 .................................... TAGTGATGGCGAAAAACCTAACATCAGGAA 5706 36 91.7 29 ................A.C..........A...... TAACCAGCGAGATTACATGTTGTTTTTTT 5641 36 94.4 35 .............................A.....T GAAAAGAAGAGTTGGATGCTTCACTTGATGTTATT 5570 36 80.6 27 .......G........A..........A.G...GCT ACCTTTAAAGGCTTCGATGATTAAAGC A,G [5536,5545] 5505 36 86.1 29 ........A......AA........A...G...... AGATTAACGTGTAGAAGAGCACTAGCAAT 5440 36 86.1 28 ............A...T............G....TT TTATTCAGCACCAGGATTAGAAAGGCAC TTA [5419] 5373 36 88.9 137 ..............C.A........A...A...... AAAAAAGATATTAGAAGAATGAAAGTTCGATTGATTTTAGAGCTAAGTTATTCTAACAGTACACCTATTTACAAGAACGGAGCTATGTAATTTTTATACTTAGCAAACTATGGTAAACCGTTATCTCTTAGGAAATG 5200 36 88.9 29 .........T....C.A............A...... TACTAATTTGAAATCTATTGTGGAGTGTT 5135 36 80.6 0 ..............C.A........A...GT..GG. | ========== ====== ====== ====== ==================================== ========================================================================================================================================= ================== 15 36 92.6 38 GTTTTAGAGCTATGTTGTTTTGAATGCTACCAAAAC # Left flank : ATGAGTTACTAGAGCTAAGGCGCTATATCTCGTTAAACCAAGTAAAAGTTTTATTTGTTGAACCTCGAAAAGTAGAAGGATTTTCGCAAGTTATTCTAGATTCAGATTATTTTTTACAAGTGGAAAATGGAATGTAAGTATCCAAATGTTCTTTGAAAACTAAATAGATTTTATGTGAACCATAAAATAAGCATTCAAAATTGAAATCTTGCTATGGATAAGTGGCGCGATTACGAAATCTAGGAGAATAAAAAATTCTACG # Right flank : TAAAGCTTAGGAGATTATATGGACAAAACAATGAGCCTATAAAGTGTTTTTAGTGAGCGGAAAATAAATATGTATCGCTTCTATACATACTCAAGAGATGAAATTAAAATATAGCATCAAAAATCATCCTGAGTAATAAGCCACTGTAAACTTTGGTTCCTTGTCATTACCTTTTAAAAAGTTTTTTCTTTGTCATTTATCATGTACTTCTTTAAATTCTGCGTTTACTACGGCAAGTTAATGCAAGCTCAAATGAGGATAGGTTAGAGCTTAGCTTAATTGTGATTCTAATTTCATTCAACAAGCACGTTTAGTAGATCAAAAACATGGGAGAGAAAAAAACAACAGAAATTCTAGGGAATTTAAGTAGCGTATTGTTGATGGTTAGGTCTGTGTTAACTGGATTTAAGAGAAAGAAATATGATTAAGTAAAAAAAGCCAATCTACTCTGAGTTAGTACAAGAATAGATTGGTTATTGTAATAGGAAGAAACTCGGTAT # Questionable array : NO Score: 4.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:-0.68, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //