Array 1 54760-52487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXRH010000005.1 Prevotella histicola strain SCHI0034.S.6 Contig_5_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 54759 47 93.6 30 A........C............A........................ AATGGAAGATTACGGAAAATCTTACCTTCT 54682 47 100.0 30 ............................................... ACCTTCTTATTTTTAATGTCTTCTGCGACC 54605 47 100.0 29 ............................................... ATTCGTTATCGCGAGAAAGGAGCGTATAA 54529 47 100.0 30 ............................................... CCTGACAGAAATAACTGTCTGGGTAAATAG 54452 47 100.0 30 ............................................... TAAATGACCTAGATCCTAATGATCGTTACA 54375 47 100.0 30 ............................................... AAAGCAAAGCGAGAAGTCATGTAAAGCGAG 54298 47 100.0 30 ............................................... ATAGTATCCTCTAAAACTATCAGCGGTACT 54221 47 100.0 30 ............................................... CGGGTGTGTATGAGAAAGAGATTGCGACAA 54144 47 100.0 30 ............................................... TATAACTTTCTCCGAGACTAACATTCTTTT 54067 47 100.0 30 ............................................... ACATTTCCTCACCTAACTTATTTCCGAAGT 53990 47 100.0 29 ............................................... GCCAAGCATCAGAAGCTTTAGGAATCTCT 53914 47 100.0 30 ............................................... CGTGGAAGAGCATCTTTAAGCTTTGAAATA 53837 47 100.0 29 ............................................... CACATACAAAATGAATATGAATACAGATA 53761 47 100.0 30 ............................................... AAACTACTTTTAAGACGACAAGTAGACTGA 53684 47 100.0 30 ............................................... TTAGTGGGCGTATAACCCATATTGAATTGA 53607 47 100.0 30 ............................................... GGGGAACAAATCTAGTAAACATAATTCAAA 53530 47 100.0 30 ............................................... AACGATGAGATTATCAATCGTTGAATTATA 53453 47 100.0 30 ............................................... CATTCGCAAGCCGAAAATCGCAACTATCAG 53376 47 100.0 30 ............................................... ATATATGGTTTTTTTGAATCAATAAATTCC 53299 47 100.0 29 ............................................... TAAAAGCAAGACTAAATCCGTACTAGAGA 53223 47 100.0 30 ............................................... TCCTGAACAAAACGATAACGCTGCCAAGTA 53146 47 100.0 29 ............................................... ACGCACACAGAATAAATAATCAGGAGAAG 53070 47 100.0 29 ............................................... AGTTAGGAGTATCGATATTTGCGGATACA 52994 47 100.0 30 ............................................... ATATACCACAGAATACTCTGAAATATATTA 52917 47 100.0 30 ............................................... CGCAACATGACATCCGAAGAAACACGAATA 52840 47 100.0 30 ............................................... GGAGTATCACGAATAAGATTCCGCTGATAT 52763 47 100.0 30 ............................................... GGTGTGGGATCTTCTACAAAAGGAAGAACA 52686 47 100.0 30 ............................................... CACCATTACGGATAAGTTGACGCATGTCAG 52609 47 100.0 29 ............................................... TATTTCATTGGCAAAACAACAGGCATTTA 52533 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 30 47 99.8 30 GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTATCAGACACAAC # Left flank : TAGCAATAACAATAATTATATATAGTAGAACAAATCTACCACTACGTAAAAGAAGAAAAGGGGGATAAGAAAAATATAAAAAAATAAGGCCGCTAAAGAACGACCTTGGGCGGTACACGATCTTTCGACCCTGTCCCTAAACCATATTACTATGATCTGATGCAAAGGTATATAATTAATATTAAACTCCAAAATCTAAATCTCTTTTTAAAGTTAATTAGCATTAAAAAGCCCGTTGTGATTCGCTTGAAAATACGTACCCTTGTGGTAGCAATAACAATAATTATATATAGTAGAACAAATCTACCACTACGTAAAAAAAAGAAAGGGGGATAAGAAAAACATAAAAAAGTGGGACGCTTAGAGCGCCCCTTGATGGTACACGATCTTTCGACCCTGTCCCTAAACCATATTCTTATGATCTAATGCAAAGGTATATAATTAATTTTATACTTCAAAATATAAATCTCTTTTTTAAATTAATTAGTATTAAAAAGCCC # Right flank : TCAAGTAGCGTAAGAAGGTGGTTATCAACACTGTAACACCTACTTTGAGAAAAGAAAAAATGCAAGTAAAAATAAAGTTCCACCATTAGAAGTGGAACTTTATTTATTTCTAAAACAGCTCTAATTGGACTCCAGGAGCATTTGGCTTATGCGGTTTCTTGCCATAAAAAAGTTTAATTTCTTCAAACTGTTTATCAGTTATACTCATTATTCCAACTTTCCCATACACAGGAATAATGGTTGACACCCTCTTAATATGCACTTCCATGTTTTCTTTACTACCACAATGGCGTATGTAAATAGAGAACTGGAACATTGTAAATCCGTCTTTTAGCAAGTTCTGACGAAAGAGTGCAGCAGCCTTTCTCTCCTTCTTTGTATCTGTGGGTAAGTCAAAAAACACCATTAACCACATACTCCTATATTGACTAAATCTATAAGTTTCCACTGAAGGGGATTATAAATCAGGATACAATATTCTTCTTTGCTCACCATTAAAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTAAAATTAGTATCTTTGCATTATCAGACACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //