Array 1 160249-159731 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXH01000002.1 Salmonella enterica isolate STY36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 160248 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 160187 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 160126 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 160065 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 160004 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 159943 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 159882 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 159821 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 159760 29 96.6 0 .....T....................... | A [159733] ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATCCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 177812-176381 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXH01000002.1 Salmonella enterica isolate STY36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 177811 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 177750 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 177689 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 177628 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 177567 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 177506 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 177445 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 177384 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 177323 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 177262 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 177201 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 177140 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 177079 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 177018 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 176957 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 176896 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 176835 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 176774 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 176713 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 176652 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 176591 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 176530 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 176469 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 176408 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //