Array 1 48179-46806 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDPZ01000024.1 Escherichia coli strain 998, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 48178 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 48117 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 48056 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 47995 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 47934 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 47873 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 47812 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 47751 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 47690 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 47629 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 47568 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 47507 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 47446 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 47385 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 47323 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 47262 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 47201 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 47140 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 47079 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 47017 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 46956 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 46895 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 46834 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 23 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 100318-101993 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDPZ01000017.1 Escherichia coli strain 998, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100318 29 100.0 32 ............................. TTACGCCATCAGTTGAATATGTGCGCGCCATT 100379 29 100.0 32 ............................. CGCTACTTGCGCCGGGCGCAAAACTTGGCTGA 100440 29 100.0 32 ............................. GCTTGCGAATGTGTGCCGTAGAACGTGCGTCG 100501 29 100.0 32 ............................. ATTTCGCGCTCTCTGTATCGAATGTCACGAAA 100562 29 100.0 32 ............................. ATTCAGAAAATTTAAAAATGTGGGCGCGTGGC 100623 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 100684 29 100.0 32 ............................. GTGTATGCGGGTGTGTGTGGCTGCCAGTGCCG 100745 29 100.0 32 ............................. GCTCATTTTCCGGTGAAGTGAAAGCGTCTACC 100806 29 100.0 32 ............................. GGGGCGAGGTGATCTTTCAATAACAATACAGC 100867 29 100.0 32 ............................. TGAGCAGATGCATATAGCGCCCGGGGTGTATG 100928 29 100.0 32 ............................. CTTTCGCGCATATGCTCGATCACATAACCGAA 100989 29 100.0 32 ............................. TGAGAAAGAATTATTCTCTGACATGGGGCCGC 101050 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 101111 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 101172 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 101233 29 100.0 32 ............................. TCTTCACCGGTTTTGATTTCAAGTTTTTTGAG 101294 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCT 101355 29 100.0 32 ............................. GCGAACTCGTAATTTATCAGGCTCGAATTCAG 101416 29 100.0 32 ............................. GCGCTCACGTTTAGTGCCAGAGCCAGGCGGCG 101477 29 100.0 32 ............................. TCGCTGGCTACCCTGGGGGTATTCAGTGACTA 101538 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 101599 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 101660 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 101721 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 101782 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 101843 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 101904 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 101965 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //