Array 1 5370-6983 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZZ01000033.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B5285 NODE_33_length_51653_cov_71.139502, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5370 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 5431 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 5492 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 5553 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 5614 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 5675 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 5736 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 5797 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 5858 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 5919 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 5980 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 6041 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 6102 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 6163 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 6224 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 6285 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 6346 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 6407 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6468 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 6529 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6590 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6651 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6712 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6773 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6834 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6895 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6956 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23116-23755 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRZZ01000033.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B5285 NODE_33_length_51653_cov_71.139502, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23116 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 23177 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 23238 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 23299 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 23360 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 23421 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 23482 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 23543 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 23604 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 23665 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 23726 29 96.6 0 A............................ | A [23752] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //