Array 1 400-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_APBA01000189.1 Acinetobacter baumannii ABNIH11 contig00194, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 399 30 96.7 31 ............................A. TTTATTGCTGTTAACTCTAAATACCCTTCCG 338 30 96.7 30 .............................A AAAGTAGAGAGTGGCGGTGATTCACTAAGA 278 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 218 30 100.0 30 .............................. GTACAACAATATGACCCGTATCGATGTAAC 158 30 93.3 30 ............................AA CAATTGCCTGAGTGGTATGAGCCACCAGTA 98 30 100.0 30 .............................. TGATAGCTAAAGTAGAAATCAAAGTCGCAA 38 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 7 30 97.6 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : AAATCAAAGTCGCA # Right flank : TTTATTGCT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [13.3-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1661-3429 **** Predicted by CRISPRDetect 2.4 *** >NZ_APBA01000059.1 Acinetobacter baumannii ABNIH11 contig00059, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1661 30 96.7 30 .............................C ATCAAAGGCTTTGAGGGTAAGCGCCTTTGG 1721 30 96.7 30 .............................G TTGCGCTGTTTTTGAACGTGTAATTGGATA 1781 30 93.3 30 ............................CC AAAGCGGTTAAGCCTCCAAGATTTGCATAC 1841 30 96.7 30 ............................A. GGTAATACAATTCAATCTCACTACAAGAAT 1901 30 96.7 30 ............................A. ATATTTTACGTGTTGATTCAACTACGGGTG 1961 30 100.0 30 .............................. TGGGGTAACTGGTGCCTTTAAGTTGTTTTG 2021 30 100.0 30 .............................. CCAAAGTCTTGTTCAATATCTTGTTGTTGA 2081 30 100.0 30 .............................. GCTCATCAATACAGCTACAAGAAAATTTGT 2141 30 93.3 30 ............................AG CATAAGCATAAAAATTATGTGTGAATATCA 2201 30 93.3 30 ............................AA TATGCAACAATAGGAAATTGCTCAGCATCT 2261 30 93.3 30 ............................AG TTACATCATTGCTTTTAGTCTTTTCTATCT 2321 30 96.7 30 ............................A. GGGCCGCAACCATACGGTCTATGACTTCCA 2381 30 96.7 30 .............................C ATGATCATAGCCCTTATAGATATCGTATTT 2441 30 96.7 29 ............................C. GCGAAAGCGGGGTTTTTATTGCCTGAAAT 2500 30 93.3 30 ............................GC ATAGGCATTTACTCCCGCTGTGAGTGAAGG 2560 30 96.7 30 ............................A. CTGCAAGACCACTGATAGTTGTTGAGAATC 2620 30 96.7 30 .............................G TGGCGTAGCGTTTCCAAAGTTGCCCATTGG 2680 30 93.3 31 ............................CC AAGACGTGACCAACTCACCAGTTGTCACAGG 2741 30 100.0 30 .............................. TTGAAACTTATAGGCTTGGCTTGGGTTATC 2801 30 96.7 30 .............................G AAAGGGATTTAAAAGCAGTTACATAAAATT 2861 30 96.7 30 .............................G AATTGGATTTCGTAAATCATTGAGCAAGTT 2921 30 93.3 30 ............................AG CATCAAGTAGATCAGCAGTTACCTGTTCAG 2981 30 100.0 30 .............................. CTGTATTAGTGGCCTTCATGTGCATTAAAA 3041 30 96.7 30 ............................A. ACATGCCCACGTTGAAAATCGGGTACCAGT 3101 30 96.7 30 ............................G. ATTAAAACTGCTTATAAACTTTCTTAAATC 3161 30 100.0 30 .............................. GAAAAAAAGCATCATATTGTTCGGGGCAGG 3221 30 96.7 30 ............................A. TTTTTCTGTTAACTCTAAAATACCCTTCCG 3281 30 96.7 29 .............................A AAGTAGAGAGTGGCGGTGATTCACTAAGA 3340 30 96.7 30 ............................G. TGTCTGATCCGACAATTTGGCTGAGTACGT 3400 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 30 30 96.7 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCATAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : GTACAACAATATGACCCGTATCGATGTAACGTTCATGGC # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 7812-6579 **** Predicted by CRISPRDetect 2.4 *** >NZ_APBA01000090.1 Acinetobacter baumannii ABNIH11 contig00090, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 7811 30 96.7 30 .................T............ CTCATCGTGAAGGTTTTGCAAATATGCCTT 7751 30 96.7 30 .............................G TCCGAAATTCAGATGGTGAAGTGACATATG 7691 30 100.0 30 .............................. CAACCTACGCAAGTATTATGGGAACTATTT 7631 30 96.7 31 ............................G. CTTTATCAGTTACGATGGCATGAGTTTTTGT 7570 30 96.7 30 ............................A. AGCACGAGCAAGTTCTTGAGATGCCAAAAA 7510 30 96.7 30 ............................A. ATCTCGCAGATTTGGACAAGGTCACGAATA T [7490] 7449 30 100.0 30 .............................. GGACAAAGATTATGACTGAGAAAGACGAGA 7389 30 100.0 30 .............................. GGATGTGCAATTTGGTCAAGATGTGGGGAG 7329 30 93.3 30 ............................CG AACACGACTTGAACCAAAGTTAGAAAAATA 7269 30 93.3 30 ............................CA ACTAAAAGCTATTTATGGGGGTAAAAATTT 7209 30 96.7 30 .............................G TCATTGGCCGGCCATTCACAACCCCGATAA 7149 30 93.3 31 ............................CC AAAAAATGAGGAAATTGGACAATATCCAACA 7088 30 96.7 30 .............................G TTGAACGAGTTATTCATAAGTGCCCGAAAT 7028 30 93.3 30 ............................AG CGGAAATCTTTTCAAGTGCGTAGGGGATAA 6968 30 100.0 30 .............................. CTCCAAGTAAAGAATAAAACAATATACCGC 6908 30 96.7 30 .............................C AAGGCGATCCACCTCCCGTCACAGTCATTT 6848 30 93.3 30 ...........T.C................ TGCTAAAAGGATTTATGCTTTAAAATACTT 6788 30 86.7 30 .......A.....C...T..........G. TGGCGTACGGATAACGGAAGAAAGCATAAG 6728 30 86.7 30 .......A.........T..........AA ATAACCACGGTTGTGGTAAGTCACTTTTAC 6668 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 6608 30 70.0 0 ...T...A...T.....T..C...AGCG.. | ========== ====== ====== ====== ============================== =============================== ================== 21 30 93.5 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : TGAAACATCAAAGCAA # Right flank : AAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCGACCAACCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGTCAAAGCGATGGCGAAATCACCGATGCAAAATCGCAGTTACCAGAAGGTGTTATTATTGGCCGTACTTGCTTAAACTCATTAGAACTTGCCCAAAAAGCTATTGCCGATGGTGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //