Array 1 274033-275473 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBR01000015.1 Pseudomonas aeruginosa strain Pa1014 K5_S92_R1__paired__contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================================== ================== 274033 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 274093 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 274153 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 274213 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 274273 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 274333 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 274393 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 274453 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 274513 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 274574 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 274634 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 274694 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 274754 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 274814 28 67.9 68 ...................NNNNNNNNN NNNNNNNNNNNNNNNNNNNNNTAGGCAGCTAAGAAATGGATCAAAGAACGCATTCTCGGCACGTCGAA 274910 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 274970 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 275026 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 275086 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 275146 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 275206 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 275266 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 275326 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 275386 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 275446 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ==================================================================== ================== 24 28 97.5 33 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 284207-283999 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBR01000015.1 Pseudomonas aeruginosa strain Pa1014 K5_S92_R1__paired__contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 284206 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 284146 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 284086 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 284026 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCTAAGAAATGGCTGTCGCTGCGCTGCTGGCCGCTGTGTATGTTCACTGCCGTGTAGGCAGCTAAGAAAGGCTGGTCCCAGAGCGGGTCGACGGCACGGTCGTTCACTGCCGTGTAGGCAGCTAAGAAAGAACCGCGCGTTCATTGCTGAAGGCCATCGTCGTTCACTGCCGTGTAGGCAGCTAAGAAAACATCAGCGCCGCGGTAGCCGATGCCGATATCTGTTCACTGCCGTGTAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTAGGCAGCTAAGAAATTTCCCCGCGAGGCATAGCAGGGATATCTTGT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 285096-284518 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBR01000015.1 Pseudomonas aeruginosa strain Pa1014 K5_S92_R1__paired__contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 285095 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 285035 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 284975 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 284915 28 100.0 42 ............................ NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 284845 28 53.6 32 NNNNNNNNNNNNN............... AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 284785 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 284725 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 284665 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 284605 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 284545 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ========================================== ================== 10 28 95.4 33 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GCTAAGAAATTGATATGCCGGTAGAACGTCGGGCGAGACATGTTCACTGCCGTGTAGGCAGCTAAGAAATCGAACGCTGCTGAGCGCCGAACGCATAGATGGTTCACTGCCGTGTAGGCAGCTAAGAAAAGACCGAGGACGGCTCGAAAACTCGGATGATCGTTCACTGCCGTGTAGGCAGCTAAGAAATTCGACGGCCACGCCTCAGCCCGGCCCAGGCCGTTCACTGCCGTGTAGGCAGCTAAGAAATTATTGAAATCCTCAGCGGCCTGCACTTGCTCGTTCACTGCCGTGTAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGGCAGCTAAGAAATGGGTGTCCAACATCGACGGGTCGAACTGCTC # Right flank : ACATCAGCGCCGCGGTAGCCGATGCCGATATCTGTTCACTGCCGTGTAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTAGGCAGCTAAGAAATTTCCCCGCGAGGCATAGCAGGGATATCTTGTGTTCACTGCCGTGTAGGCAGCTAAGAAATACAAGCAGATCGGCGAGCTGAGCGGCAAGGAGTTCACTGCCGTGTAGGCAGCTAAGAAATCGTACTGGTCGAGATTTCCGATTCGGAAGCCGTTCACTGCCGTGTAGGCAGCTAAGAAATTCGACGCCGCTAGGGTTGCCGCATCGCCGTCGTTCACTGC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 285675-285347 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBR01000015.1 Pseudomonas aeruginosa strain Pa1014 K5_S92_R1__paired__contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 285674 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 285614 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 285554 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 285494 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 285434 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 285374 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : TTATTGAAATCCTCAGCGGCCTGCACTTGCTCGTTCACTGCCGTGTAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAGGCAGCTAAGAAATGGGTGTCCAACATCGACGGGTCGAACTGCTCGTTCACTGCCGTGTAGGCAGCTAAGAAATGCGTAGATGCCGCGATCATAGCGCGCCCTACGTTCACTGCCGTGTAGGCAGCTAAGAAATTCGGTACTTCTGAACCATACGTCGCCGCATAGTTCACTGCCGTGTAGGCAGCTAAGAAAAGTCATCGATGAACGACGAGCCGGTCAGTGCCGTTCACTGCCGTGTAGGCAGCTAAGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //