Array 1 105910-107341 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYYR01000010.1 Salmonella enterica subsp. houtenae serovar 50:g,z51:- strain 2011K-1657 NODE_10_length_134960_cov_3.78081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 105910 29 100.0 32 ............................. CAACGCCCTGACATTCTCACGCCCGCGCGAAA 105971 29 100.0 32 ............................. GGACTTCCCACTCAAAAACAATTCCTACGTTA 106032 29 100.0 32 ............................. AGCAGTGGAAAGTTGAGGGATTTCAGCCCTAT 106093 29 100.0 32 ............................. CATTCAACCAGTTTGGTGGAGCGTTGAAGTTG 106154 29 100.0 32 ............................. AGTGCATCGAGGCGACCAGCGCGGTGCTGACA 106215 29 100.0 32 ............................. CGGGCCGCACTGGCGGCCCATAGGTATTACGC 106276 29 100.0 32 ............................. TGATTTTATAAAATTCTGTAAACGCAGTTGGC 106337 29 100.0 32 ............................. GCGACCTAAGCCGCGCTCAGTTGCTTAGCCAT 106398 29 100.0 32 ............................. CGGTCGCCATTTGTGGGCAAGATTTTGCGGTA 106459 29 100.0 32 ............................. GGCAAAAATCCTATTTTGGAATTGCCAACAGG 106520 29 96.6 32 ............................A ATAAATAAATGTGTACCACATAATAACAGCAA 106581 29 100.0 32 ............................. CTGCGTTAATATTACTCATTGATTAGCATCCA 106642 29 100.0 32 ............................. GATTTGCGCAAAAAAATATTTAAGACGCTTGC 106703 29 96.6 32 A............................ CTACGGCGAAAATCGCCCATTAAACCACGACC 106764 29 100.0 32 ............................. GATGTAGCTGAACTTCTGGAGGTGCTGAAATC 106825 29 96.6 32 ............................A GTAACGCGCCTTACTTCTGAACGTGATAAATA 106886 29 100.0 32 ............................. CCACCCACCAGCCCAGCGCCAAAACCGCCACC 106947 29 100.0 32 ............................. GAATGCTTAAAACGCCGGATGATTTAACCGGA 107008 29 100.0 32 ............................. AACAACCAGTAACAGCAGTACAGAGAACGCCC 107069 29 100.0 32 ............................. AAACTATTTCTGGAATGCAGGAAAAAGACCCG 107130 29 100.0 32 ............................. AGACAGAAAAGACCCAAGAAAAAAACATGGAA 107191 29 100.0 32 ............................. GATCTGTCCGGTATGGTTATTGTCTGCGGATA 107252 29 93.1 32 ................T...........A GAATGGCGCTAGTTCGTCATATCAATGTGAAT 107313 29 89.7 0 ............T..............GT | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGAGGTCCTTGCCGCCGGAGAAATCCAGCCGCCGTCTCCTCCTGAAGATGCGCAGCCCATTGCGATTCCACTTCCTGTTTCTCTGGGAGATTCAGGCCACCGGAGTAGCTGACAATGAGTATGTTAGTTGTTGTTACAGAAAATGTACCGCCACGTCTGCGAGGCAGGCTGGCCGTCTGGTTACTGGAAATTCGCGCTGGTGTTTATGTTGGCGATGTTTCAACAAAGATCCGCGAGATGGTATGGCAGCAGCTCTCTATTCTGGCAGAGGGAGGGAATGTTGTGATGGCATGGGCGACGAACACTGAATCAGGGTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTGGATCTTGATGGATTGCGATTAGTGTCTTTTCTGCCTGTTGTAAATCAATAAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTAGACTTTGGTATGCTAAAAAAAGCCTTTTAATTCAGTTGTGTATATTTAGA # Right flank : TTTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //