Array 1 431877-433002 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQF01000006.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN024774 CFSAN024774_contig0005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 431877 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 431938 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 431999 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 432060 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 432121 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 432182 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 432243 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 432304 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 432365 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 432426 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 432487 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 432548 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 432609 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 432670 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 432731 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 432792 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 432853 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 432914 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 432975 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 449261-450985 **** Predicted by CRISPRDetect 2.4 *** >NZ_JWQF01000006.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CFSAN024774 CFSAN024774_contig0005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 449261 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 449322 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 449383 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 449444 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 449505 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 449572 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 449633 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 449694 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 449755 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 449816 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 449877 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 449938 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 449999 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 450060 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 450121 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 450182 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 450243 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 450304 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 450365 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 450426 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 450487 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [450529] 450529 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 450590 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 450651 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 450712 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 450773 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 450834 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 450895 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 450956 29 96.6 0 A............................ | A [450982] ========== ====== ====== ====== ============================= ====================================== ================== 29 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //