Array 1 468993-470118 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBK010000040.1 Salmonella enterica isolate 1967_08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 468993 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 469054 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 469115 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 469176 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 469237 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 469298 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 469359 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 469420 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 469481 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 469542 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 469603 29 100.0 32 ............................. TCCGGCAAAAATCCAGACCGACGGCGCAATGG 469664 29 100.0 32 ............................. TTAATTAATCATTTTGTTTAAATCCCGGATCA 469725 29 100.0 32 ............................. TGTTCGCGAACTGTTCACAAAATTGATTAAAT 469786 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 469847 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 469908 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 469969 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 470030 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 470091 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 486387-489406 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBK010000040.1 Salmonella enterica isolate 1967_08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 486387 29 100.0 32 ............................. ACACACAGGCAAATACCGGCGTCGCAATTTAC 486448 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 486509 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 486570 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 486631 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 486692 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 486753 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 486814 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 486875 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 486936 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 486997 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 487058 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 487119 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 487180 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 487241 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 487302 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 487363 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 487424 29 100.0 32 ............................. CCCGAACTGATTGATGCCATCAGTCAGGGGGC 487485 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 487546 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 487607 29 100.0 32 ............................. GCAAAACGTCTGCAATGCCTTTTTTAACAAGA 487668 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 487729 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 487790 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 487851 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 487912 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 487973 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 488034 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 488095 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 488156 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 488217 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 488278 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 488339 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 488400 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 488461 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 488522 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 488583 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 488645 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 488706 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 488767 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 488828 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 488889 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 488950 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 489011 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 489072 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 489133 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 489194 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 489255 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 489316 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 489377 29 93.1 0 A...........T................ | A [489403] ========== ====== ====== ====== ============================= ================================= ================== 50 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //