Array 1 211091-209797 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWRG01000070.1 Salmonella enterica subsp. arizonae serovar 18:z4,z23:- str. CVM N23850 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 211090 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 211029 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 210967 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 210906 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 210845 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 210784 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 210723 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 210662 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 210601 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 210540 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 210478 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 210375 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 210314 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 210253 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 210192 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 210131 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 210070 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 210009 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 209948 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 209887 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 209826 29 96.6 0 A............................ | A [209799] ========== ====== ====== ====== ============================= ========================================================================== ================== 21 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 228777-227223 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWRG01000070.1 Salmonella enterica subsp. arizonae serovar 18:z4,z23:- str. CVM N23850 contig_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 228776 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 228715 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 228654 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 228593 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 228532 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 228471 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 228410 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 228349 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 228288 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 228227 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 228166 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 228105 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 228044 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 227983 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 227922 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 227861 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 227800 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 227738 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 227677 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 227616 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 227555 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 227494 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 227433 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 227372 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 227311 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 227250 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //