Array 1 8264-9070 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMU010000271.1 Serratia marcescens strain A12 Contig_271_35.1522, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 8264 28 96.4 32 .............C.............. AGATGAAGGGCCACCGGCTTGATAACCCTCTT 8324 28 96.4 32 .............C.............. TTCATGGCCGGAACCTGTTATTTTAAGGAAGT 8384 28 100.0 32 ............................ GCTGGTGGCCGACATTTTGCCGATTGGCACCA 8444 28 100.0 32 ............................ AATGCCAGCGATCTGTCTACTGCGTCGGGTAA 8504 28 100.0 32 ............................ AGCAGGGCGAGAATGGTTTCCGGTGTTGCGTT 8564 28 100.0 32 ............................ GGCTGCGCCTCCCGGTTAGCCGCACGCACCAT 8624 28 100.0 32 ............................ CGGGGCTATTGCGCAGTCTACTCAAAATAACG 8684 28 96.4 32 A........................... GGTTACCCGGTACGTGCGGCACAGCAATAAAG 8744 28 100.0 33 ............................ AAAGCAGAAAAGAAATGGCTGGACGAACTGCAA 8805 28 100.0 31 ............................ TTGACCGCCAGGGACACGAGCGAATCGCGTA 8864 28 100.0 32 ............................ TTTGCATCGTCCGGCAGGGATTCACTGTCGAG 8924 28 100.0 32 ............................ ACTGACGCAGCACTTGCAGCTATCCAGGCGCA 8984 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 9044 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 97.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1407-116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHMU010000303.1 Serratia marcescens strain A12 Contig_303_57.1359, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1406 28 100.0 32 ............................ GCGACAATTACTCGTTCGAAGTGCATTTTCAT 1346 28 100.0 32 ............................ TGACGGAGACTATCTCACAGAGGAAATGAGCC 1286 28 100.0 32 ............................ GCGACGACATGGGGCCAGAAAAAACCACCATT 1226 28 100.0 32 ............................ ATGGGAAAAGCACCACGCCCTAATGCGCGTCT 1166 28 100.0 32 ............................ TTAACAGGGCGGAAAAACGCGGTCAAGCGTAA 1106 28 100.0 32 ............................ GCCCTGGGCGGAGGTAGCCACAAAGGCGCATA 1046 28 100.0 32 ............................ TGGGTGATGGCGTTGACATCTTGCAGCAGCAG 986 28 100.0 32 ............................ GCAGGGTCATGCATCGCATTATTGCCGTTGAA 926 28 100.0 32 ............................ GGCAGGCAGTAAGGCGGCGAAGAAAGAAAAGA 866 28 100.0 32 ............................ ACGCGGGAACCGTTCACGGCTTCTTTTGCTTT 806 28 100.0 32 ............................ AATATGTCGGAGCTTACAACACGCTCCACAAC 746 28 100.0 32 ............................ CTTCACGTCCAGCGTAAGGCCGTCAGACCAGT 686 28 100.0 32 ............................ CAGTGGACGTACTGTTACATCGACTCGAGAAA 626 28 100.0 32 ............................ AGATGGCGAGCGAACTGATACATGATACCTGT 566 28 100.0 32 ............................ GATATATTCAGAGGGACCCGTTCTATCACCCC 506 28 100.0 32 ............................ TGCAGGCCCAGCAATTCCATAACGCTGCGCAC 446 28 100.0 32 ............................ GTGAAGCGACATTCTCCGGCAACGTGGACGCC 386 28 100.0 32 ............................ CTCAGCGCGCACGATGAAGTTAAACTCATCGC 326 28 100.0 32 ............................ TTTGACTACAGCATAGCAATGTAAGGAACCCA 266 28 100.0 32 ............................ AGAGAGAAGATCTCTAAGGGATCGAGTGTTTA 206 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 146 28 96.4 0 ....................A....... | G,A,A [119,123,125] ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //