Array 1 58692-58114 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOHK01000026.1 Escherichia coli strain MOD1-EC5068 MOD1-EC5068_26_length_76264_cov_132.562, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58691 29 100.0 32 ............................. TTGGCCGAGGGCGAGTATTCGACCAATGAGGC 58630 29 100.0 32 ............................. TTGAATCTATCAATAATGATTTGCAACAGGAA 58569 29 100.0 32 ............................. GCACAAGTGACTACATCAAGGATGGGGAATGG 58508 29 100.0 32 ............................. ATTAAGCGATTTTTCCAGAAAGTGCAATAGCG 58447 29 100.0 32 ............................. GTTTTTGCCGCTGCCAGATTGCCGAATATAAC 58386 29 100.0 32 ............................. AGGCGGAAGAAACTTTTGATGTCTGGACCCGA 58325 29 100.0 32 ............................. CGTTTTGTACGCCGGGGCGGACGGATCATTCA 58264 29 100.0 32 ............................. CGTATTGCAGTGACTATCCCTAAAAACCTGCA 58203 29 100.0 32 ............................. TCAGCAACAATTATTTTCGTCGCATCGTCATA 58142 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 73983-73647 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOHK01000026.1 Escherichia coli strain MOD1-EC5068 MOD1-EC5068_26_length_76264_cov_132.562, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 73982 29 100.0 32 ............................. CAGTGTTTCCCGATGCCGGAGACATTTCACGA 73921 29 100.0 32 ............................. CAGTGTGTACAGCGGCTGGCAACGGCTGACGC 73860 29 100.0 32 ............................. GCAGGTTACGCGCCAGTTTGCTACCGGATTTT 73799 29 100.0 33 ............................. TCAATCTATAGCGTCAGTAAATGGAATTAAGGC 73737 29 96.6 32 ..................A.......... TTATCGGTCATCAACTATAGCGCGTATTTACT 73676 29 75.9 0 ...........T...A.ACAA....G... | C [73667] ========== ====== ====== ====== ============================= ================================= ================== 6 29 95.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACTTGCATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTTAATATTTATAAGCGTTATAAATGGGTGGAACCTATAAAGAATTCCACTCATTTGTATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCCGGACTAATCATTGTCATACTCTACAAATTCCGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTCGGTATAGAATTACTTTAAATATTTAGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGT # Right flank : ATAATATCGGCTATACCAACCTAATATTATCAAATGTTAAAGGTTCTAATTTAAGAGGAAATTTAATGTCTACGTTAATGGAAAAAGAATCTCTCCTGAATGGCGTGAGTCAAAATATTGCATTTTTATCAAATGTATCTGAAATGGTTTACAACTCTCAGAATGAAGAGTTGCAGCATGAAATATATGAGTTGGTGAGTTATAAAGATTATCTATACTCAACAGCCCATGAACTTGTTGATTTTCAAGATGGTGTATTACGATTTCAACAAATTAGAACAAAATACAGGCAAGAGCTAAAAGAACCCGGTTATCCTGTAGGTAATTAAGAAATATTGTCTTTATGGTAGGAAAACGCAATTTTTCATATTATAAATATGAGATTAAAACAATAATTTAATATCATGCTTTTATTTTAATCTCGAAAATGCCTAATTTCATTAAATACGCTCTCCTGTAAATGTAAACCGGGCATTTTTCCGCCCGGCCTTCCCCGATTA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //