Array 1 2086-3068 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNSR010000017.1 Lactobacillus delbrueckii subsp. bulgaricus strain CIRM BIA 905 CIRM_BIA905-i1-1_scf17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2086 36 97.2 37 .C.................................. AAGAGCTGAATTTTTGGCGGGTTGATTGGGCTTATGC 2159 36 97.2 38 ...................A................ ACAAAGTGGGCTCAGGACATCATCTACGATGTCTTGGA 2233 36 97.2 36 ....................A............... AGTTGAGTCAAGCAAATCACCGGCAGGGGCTATCCG 2305 36 100.0 39 .................................... CAAGTACCATTCTGAACAATGGGACTTATACGATAATCA 2380 36 100.0 36 .................................... TCAACCGAAGAATTTCTTCATCTATGGAAAAACAAT 2452 36 100.0 37 .................................... CGCAAAGAATCTCATTTGACAAGCGCCGGCCGTGATG 2525 36 100.0 33 .................................... GTTCTACTTTTTTGAAGCCGTTTAAATCTGCTA 2594 36 100.0 35 .................................... CATTAGTAAACACAATAGTTTCATTAACTACTTGC 2665 36 100.0 37 .................................... AGCTGTAAAATTTTTAGAAAATGTATTTTTGGAAAAA 2738 36 100.0 36 .................................... AAAAAATATCTTGACTACATATTGACAAGTGTACAA 2810 36 100.0 36 .................................... CAACTGTATAACTTAACCATGCAAGAAGATGAAAAA 2882 36 100.0 40 .................................... AGAGGTAACAGAAATGAAATTAGTTAAGTTTTATTTAATG 2958 36 100.0 39 .................................... TTAAACGATTTAGAAATTGTAAAAGAATTTAAGGAAATT 3033 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 14 36 99.4 37 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : GTTTTGAAAATATATTACGCCTTCACACTCTTAAAGGCAAAGTAGTGGCCTTCTGGGTTCGCAAAATTGCAAGTTTTGGCACTGCCCATATCAACGACTTCACCAACAGTGACGCCCTTGTCCAGCAGCTTTTGGCGAGTTGCCTTTACGTCTTAGCAATTGAAAAGCAGTGACGGGGTAGCCAGGTCAAGTTCTGGTGAGTACTTGGCAATTACTTCCCGGTCAAACAGGCGCAGGCTGCTTTCCGCGTTTTCGCTGGCTGCCAGCAAGTAGGTCTTGCTTTGGTCTGGGCCGTCGCCTTCTTCTTTCACGATAAATGCTAATTTCCCAGGATTTTACAACTCAAGCCATACGGCTGACAGATTTTCTGCCAGCCGTATTTCTTTTATGCATGACTTTCCAGAAATGCGAGGATCTCAGCTTTAGTTCGGGTACTTTTATCAATATCGTAAAGCTAGCAAGGAGGAACTTTAAAAATGAAGGATGTTGTTGTAGATTTT # Right flank : CAGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTCTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACTTTAGGTACTGACACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAATTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 37712-35514 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNSR010000007.1 Lactobacillus delbrueckii subsp. bulgaricus strain CIRM BIA 905 CIRM_BIA905-i1-1_scf7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================================================================ ================== 37711 36 100.0 30 .................................... ATTTTCCTCCTCCCACATTGTCGTCCGGTT 37645 36 100.0 30 .................................... TGCAGAACTTTTTTGTGTTTTTTAATGTAG 37579 36 100.0 30 .................................... ATGTACACTGTACGTCAGCTGGCAGAAGTC 37513 36 100.0 30 .................................... TTGAGGTTGACAGAGTTGCCAGCAACGAAG 37447 36 100.0 30 .................................... TTCAACTTGATACCAGTAGTGTCGTGGATC 37381 36 100.0 30 .................................... TAAAGCGGCCGCCTGGTTACCTTGATCAAA 37315 36 100.0 30 .................................... TCACGGGCTACTGTCCCCAGCGCTTGCAGG 37249 36 100.0 30 .................................... GTAACATCAAGCACGATCAGCAGCACGACT 37183 36 100.0 30 .................................... CTTTGCGTGACGGTGACGGCCATTTGACTG 37117 36 100.0 30 .................................... CAACTGACATCACTGTAGAACAAGGCGCAG 37051 36 100.0 30 .................................... TGATCATTGATCACATGGGGGGGTGTCGTA 36985 36 100.0 30 .................................... GCCTTGTCACTTTCGCTAGTTTAACCTGGC 36919 36 100.0 30 .................................... TAAGAAATACGCCAAACTGGACACCAATAA 36853 36 100.0 30 .................................... TCGTTGATCTGAACAAGTCTCAAAGCACGA 36787 36 100.0 30 .................................... GAGAGACCGCTGGTATACATGTGTGGCGTC 36721 36 100.0 31 .................................... TCGTGTGCTTCAAATGTGTTGGCGATTTCCA 36654 36 100.0 30 .................................... GTATAGACCAGTTCTGGGCCTGCTTCACCC 36588 36 100.0 30 .................................... GCGTAGCCGCATCAGCCAGCTTTGACATTT 36522 36 100.0 30 .................................... AGGCTTCACGCTTGACACGTATCCATCCCC 36456 36 100.0 30 .................................... TCAAAGAGCAGATGGACGCCTTGCATAAGA 36390 36 100.0 30 .................................... TCATGAATGCAAAGCCACGTGATAAGCGCG 36324 36 100.0 30 .................................... TCCTTTTTAGCATTTTGCCGCACAGCCCGT 36258 36 100.0 30 .................................... ACTTGGAACTGGATCAAAGGCTAACTGCTC 36192 36 100.0 30 .................................... TAATCATACATGTCAGTATTTTGAACAGCC 36126 36 100.0 30 .................................... GCGATTTGAGCTATAGCTACAGTGCCGACT 36060 36 100.0 30 .................................... CGGGCTTCTAAAACAGTTAGTACCATACAA 35994 36 100.0 30 .................................... CGGCGTGGTAGTCGGTCAAGTAGCAGGTAA 35928 36 100.0 31 .................................... TCAATTTGGAAATCAATCAAGAAAACTGCAT 35861 36 100.0 30 .................................... AACACCCTGGCGCAAAAGGGTTGACACAGG 35795 36 100.0 30 .................................... GCTTTTGGATTTCACCCGACGGGGTCCTTT 35729 36 97.2 144 ...................................G CTGCTTGGATGCGTGGATTGAAATAGTTTTATAGGGGTGCTTATTCAATGTTGTCAATTTTCCCGACGTATGTTGGGGGTGGCCATCATAATGGCCTAATACTAAGACGACAATTCTACTCATTCCACGTAGGTGGGGGTGATC 35549 36 75.0 0 ..........A..........C...G..GAC..AAG | ========== ====== ====== ====== ==================================== ================================================================================================================================================ ================== 32 36 99.1 34 GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Left flank : CAGTGAATCTTTACTTCAAAAGTACATGACCAAATTAACTAGTTATGTAGTTGATGAGCTAAGCGCAGATGGCAGAAACAGAATCATTACCTTCTATCGCAATTTACTAAATGCTGTTCAAGACGAGTTGCTTATGGAAGATTTGCCGCTTGAAATAAGTTTTGACACAGACTTGAAGAAACTATTTAAATTTGGTGGTCTACACTTCAACAAGACACTCACTCGCGATCCATATGGTATAATCGAGACAGTACTTAGGATACATGACAGGTTAGATCTTAAGTCTACTGTTGTTTTTAGTAATGTAGCTCATTACTTAGATGTAGAACAGTTTAACGAAATATCTAAGCTGTGCTTAGAGCTAAAAAAGTCTATTATTTTTATCGAGTTTTGTAGCCATAAGGATCAGGTTGTATATGGTGATGCAAAATTCAGTTATATCGATGAGGACCTTGTTGATTGGTACTAGCCTTATATTAAAGCTGTGTTAAAAAATAACG # Right flank : TGCTTTTCATGATTGAGAAGCACTTTTTTCTGTTGAACACAACAACTTAAAAAAACGTTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATACACTGGTTATAAAAAAGCTGAGCCAAGCTCATCATCCCCAAAACAAAACTTAGTTAAGGAGAATAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCTGCTATCGACCTGGGCCAAATCGCCCTGCGCGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAATTGCTTTAAACGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGGCTGGCTGAAGCCCAAATGTTAATCGGTGACCTGGGC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAAGGTTGTCTATTCAATAAGGTTTAACCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //