Array 1 604774-604547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARON010000001.1 Listeria booriae strain FSL L7-1831 NODE_1_length_924017_cov_36.755499, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 604773 30 100.0 36 .............................. ATGGGAATCCTAGCCCTTTATTAACTTTCCCTACAA 604707 30 100.0 36 .............................. TTTTACGCGATGTTCTGCTAGCTCGTCCTTAACTTC 604641 30 100.0 36 .............................. AAGTGCGTGGACGTGTCGAGGAAATGGAAAAAGATT 604575 29 83.3 0 .................A....-.C..G.C | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 95.8 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGTCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGGTTGATAAGTGGTGTTTGGTAAGGTGGGGACAAAAATCTGTCGACCGTCGGTAGTGTGGAATTTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGCAAGGGATTGAGCCTTTTTTCGAAGTTCAGGTTGTAAGGTTTGGGAATGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : TAGATTGCCCACAGAAGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTCAACAATCCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATTTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGCGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCAGGAGCTGTTGCTATTGATATGACGACTTCTTCTCCAAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 71766-72055 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARON010000009.1 Listeria booriae strain FSL L7-1831 NODE_9_length_118817_cov_33.198770, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================== ================== 71766 27 100.0 38 ........................... AAGGCAGTTTGAATATTGTATGTCCATAAATCCTCAAA 71831 27 96.3 40 .............C............. AATGTTAAAAGTTACATCACGCGATCAAAAGCAGAACATG 71898 27 96.3 38 ............A.............. GATTCATATTTTGATAGTTCAACACAATCTTGCTTTCG 71963 27 100.0 39 ........................... AATATGGATGCAGACAGGGATTATAACGATCCATTCCAA 72029 27 88.9 0 ............A..........CA.. | ========== ====== ====== ====== =========================== ======================================== ================== 5 27 96.3 39 GTTTTTATCTAAGTAATGTGTAATGTA # Left flank : GACGCTGAGCGCAACATCAGACCAGTACTGAATTCCGAGAAAATTTGGGAAGCGGACATCGTTCTAATTGCCGTCGGATTTGCAGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTTTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCTAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAATGGATTAGGATGGTTTTCGAGAAGTAGAAAAAAATAAAAAGGCGCAAAACAGACAAATTTTTTGGAGGTCGACAGATTTGGCGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : AATCCCCAAATAAGGAGAGACCCCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACCTACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCTGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAATTCCACTCGACATATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAAACGCTTACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGCACACTAACCATGAAAAAATCACTCGATATCCAGCCCACAAAAAAGGATACAAATACTAAAACTACGAG # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 75306-75982 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARON010000009.1 Listeria booriae strain FSL L7-1831 NODE_9_length_118817_cov_33.198770, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 75306 30 100.0 35 .............................. ACGCTTGAACCAATCGTCGCGCTCACTCTTCCATC 75371 30 100.0 35 .............................. TCGGACTATTCGATAGCATATTGCCAACTTCATCA 75436 30 100.0 34 .............................. GGGACTGGAAACCATTCCATGCTGTTTTTAAAAA 75500 30 100.0 35 .............................. TCTTTTAATGAGTTCCAATAGTTTCTGTTTGCTTG 75565 30 100.0 35 .............................. GCTTTGCAAAGAAGAAGGTAAGCATAGTAAGTGCG 75630 30 100.0 36 .............................. AGTGAAGACGGCTGTCGTTTCTGCAAGGCGAAAGCC 75696 30 96.7 35 .............C................ TTGTTTAGTAGTAATGGATATTAACTCTCTTGTTA 75761 30 96.7 35 .............C................ TTGTTTAGTAGTAATGGATATTAACTCTCTTGTTA 75826 30 93.3 36 ........T....C................ CCTCTATTACCTGGTAACCAAACAGAAGGGTCTTGG 75892 30 86.7 32 .G.........G................TG TCGCTGTATCCCCTGGTTTTTTAACGCGTCCA 75954 29 76.7 0 ................-.G.G...CC..CA | ========== ====== ====== ====== ============================== ==================================== ================== 11 30 95.5 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCGTTACAACATGAAATGAGCAACTTTGAAGTACTAGATAAAGAACGCCTCGTTCAGAAAACAACATTTGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCGATGATTGTGCAAAACGGGAAGAAAAAGATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGCATTGGTACTAAAGGGGTTAAGTCTGTTTTCGGAGTTTGGGCTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : AAATAAGGCATTAGTAAAACGAATTGAATAACAAGAGGGTGAATATCCATTACTAAACAATGGATATCCACCCTCTTATCTATGCCCCATATGTTGAACATTTTTAGCATGCAGTTAACAACAATTATCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTGTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCGACTATTTGATTTGCAAGGGTAACAGTTTTTGTGTCTAGTACTCTACCATTGGCATCATATGCAGTTAGTGTGATATTGCCCGTATTTTTTAAAATCACTCGTTTTGCATAATACTTA # Questionable array : NO Score: 3.04 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : GTTTTTATCTAAGCAATGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //