Array 1 29961-28539 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVES01000091.1 Bacillus sp. AFS075034 AFS075034_110_B1_Contig91_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 29960 33 97.0 33 ................................T TTATGAGAGAGCAAAAGAAAAAGGGATTATGTA 29894 33 97.0 33 ................................G TTATAGGAATGCAGAGTTAAGGGTAGAAAACAA 29828 33 100.0 34 ................................. ATCACAGGATAGAAAGAAAGTCGTTTCACGTGAA 29761 33 97.0 32 ................................C TCGGGTGGTTATGGTAGAAGTCCCCGGACAAG 29696 33 97.0 33 ................................G AATGGTATATGCAAGATGTATTGACCGCCAAAC 29630 33 100.0 32 ................................. GGAAGGAAATCTAATCGCTAAAAAAGATAATT 29565 33 100.0 34 ................................. TTACAAAATATTATTGACCGCGTAAGCGTTAAGG 29498 33 100.0 34 ................................. ATTGCTTGAATATACCGAGTTTGATGAAGTGAAA 29431 33 97.0 33 ................................C TGTCTTGCGGTAAGTTTTGGTCAAATACAAATA 29365 33 97.0 34 ................................G AATTGAGGGCGGTATGACGGTGGAAAACGCCGTT 29298 33 97.0 34 ................................C TGAAGCAACGTCACCTAAATTGTAATTCAATTGA 29231 33 97.0 32 ................................T ATGTATTTATACGCTATGTGGGGCTAGCCCCA 29166 33 97.0 33 ................................T ATGATCAAGACAAAAGGCAAAAAATAGATTGCT 29100 33 93.9 34 ....T...........................C TGACGATATCAAACTTGCTGTCTGCTACCTTACA 29033 33 97.0 34 ................................T GTCACATATCAATCATTCGCAACTTGGTTACACA 28966 33 93.9 33 ...............................TT TAACAAGAGCAGGCGGAACTGTAGATGGCTTAA 28900 33 97.0 32 ...............................T. TTTAAAAAGGAAAGAGATGAATTTAGGGAAAT 28835 33 87.9 33 ......T....T...................TC AAAAGGTGTACGTTTAGGAAGAACAATAACTGG 28769 33 90.9 34 .......T.......................TT GATTATAGCAAAAAAAAGGGACAGAAAACAAGTA 28702 33 87.9 32 ......T..T......A..............T. CAGCAAACTGTGCGCGCGCTGGTTGGGATAAA 28637 33 84.8 33 ......T....T....A..T...........T. CTACTGGTGTAGATGTATTGCAAAAATTAGTTA 28571 33 81.8 0 ..T...T.T.......A..............TC | ========== ====== ====== ====== ================================= ================================== ================== 22 33 94.9 33 GTCGCACCCCTCGTGGGTGCGTGGATTGAAACA # Left flank : GTGCGTGGATTGAAACCTGACGATATCAAACTTGCTGTCTGCTACCTTCC # Right flank : TAGCAGGAGAACCAGGATGGAACTGGAAAGGAAAACTCAAGATTATAACGGATACGATAGATTGGTATTACATGAAAAAAGGGAAATAAGAATATGAATTGTGCGTTTTGCTATTATGCGAAGCGGTATATATTGTATAATAAGATGAATGAATTAACTAAATATCCAGTATAACTAGTAGCTTAATGGACAAACCAAAGGCACACTCCTTAGTAGGAGTGTGCCTTTTTTGTTCTAAGAAAGGGGAAATAGCAATGGATAAGAAGAAAAAGAAACGTATAAAACGTACGATTTTATTGGGAGTTATAGCAATGATTGTATCTGTATACATAGGGAGCAAATTCGAGGATCAAAACGGAAAAAGATATGCACCAGCGCAATATTTTGAAGCAGGGACAAAGTTCGTTTCATTCTAGGGGGTTCTTGCTATATTTTCATTGAATATAGTCGATGGAATATACATGACATATACTATATTCAATGATATAATGTGTGTAGAA # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGTGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.60,-4.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8475-8839 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVES01000126.1 Bacillus sp. AFS075034 AFS075034_110_B1_Contig126_140523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 8475 33 100.0 33 ................................. TGAAGAGTGTAAGGAGTGCATGGATTGATTAGA 8541 33 97.0 34 ................................A GAAAATCTATGATACGAAAGTAGAGGAAAAGGAG 8608 33 100.0 34 ................................. AAATTAAACTCAATCATCGCAAAGCACTCCAAAT 8675 33 100.0 33 ................................. CGCCCGCAAGGTAACACTCGGCGCAAAAAGATT 8741 33 97.0 33 ................................C AGGTTAACGATATCATAGGTGCAATGCCAGGTA 8807 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ================================== ================== 6 33 98.5 34 GTCGCACCCCTCGTGGGTGCGTGGATTGAAATT # Left flank : TAGATGAATATCCATCATTTCTATGGAAGTAGGTGCAGCATTTGCTAGTATTGATTACATATGATGTGAGTACAGTTACTAGTGCGGGGCGAAAAAGACTACGTAAAGTCTCGAAGGTATGCCAAAATTATGGTCAACGTGTTCAAAACTCGGTATTTGAATGTGTTGTAGACGCAACCCAGTTTATTACCTTAAAAATAGAACTTACTACTATTATTGATGAAGATCAAGATAGCCTCAGATTTTATCGTTTAGGTAATAACTATAAAACTAAGATAGAGCATATTGGTGTAAAAGAATCAATTGATTTAGAAAGTCCTTTAATTTTTTAGTGCGAACGTAAAGCGCACATGAAATTCCAAGGACATTCGCACCTGAAATTACATGATTTATGATTGGATTTTATGATTTTCTGTATAAGTTTCTTTAATTTATTAAAGAAACTAGCGTATTTTTGAACGTAATTTACGTATTTGTACGTATTTTGAACAAAAATCGCA # Right flank : AAATGCTAAATTAAATATCGAATCTTTAACTAGTAGCTTAATGGGCAAACCAACGGCGCACTCCTTAATAGGGGGGTGTCTTTTTTTGTCTAGAAAGGGGAAATTTAACGAGTTATCCGAAAGAATTCTCCTTCCTCAAGCAGGTGGGAGATGAATTTCGGTTTAGCGTAGCCAAAAAGCACTTAATTTTGCTTTTTATTTTTTGTTCAGATATAATCAGTCTTATAAATCATAAGGGTTGGTATAACAGTGAAATTAGATAATAATAACCATTCAGTGTTCCTATTGTATTATCACCTTGTATTAGTCGTGAAATACAGGAAAAATGTATTTGATGATGATATGTCAGAATATGCAAAAGACATGTTTGTACGGTTATCTGAGAAGTACAATATAACATTGGTAGAATGGAATCATGATGTTGACCATGTACATATCTTGTTCAAAGCACATCCTAATACAGAAATGACAAAGTTCATTAATGCATATAAGAGTGCAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCGTGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.50,-4.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //