Array 1 299602-298774 **** Predicted by CRISPRDetect 2.4 *** >NZ_JANJ01000005.1 Mannheimia granulomatis strain PKL10 Contig_5_consensus_sequence, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 299601 32 100.0 34 ................................ TGTTTACCGTGAGTTACTATCAGACGGGCAAGTC 299535 32 100.0 37 ................................ AACTAAATCTGTGGATAATTTGTGTAAACTTGCATTT 299466 32 100.0 35 ................................ TTTTTCTCACATTCGGATCTTTTTTATAGTCCGAT 299399 32 100.0 34 ................................ TCTATCCCACCACATTCCCGTTGAGGGATAGAAA 299333 32 100.0 33 ................................ TCGGAGAGGTTAACGCTGGGGGATAAAAAAACA 299268 32 100.0 34 ................................ CAATCTATTCGGATATAGCTCAAATTTGCGTTAT 299202 32 100.0 35 ................................ AGTACGGATGTGAGCGAGTCTTACACTGTTGATGG 299135 32 100.0 34 ................................ AATTCCTTATCTCAATAAAGAATGGTTGCAAAAT 299069 32 100.0 34 ................................ ATTTCTTAATGCAACTGGCAACTTTTATTAAAAA 299003 32 100.0 34 ................................ CTTTAACTTTGCTTCTAATAACAAGCCTAATTGG 298937 32 100.0 34 ................................ CCAAGTTATCAATTTATCGCAGATAAATGGGAGA 298871 32 93.8 34 ....T.............T............. CCTTTTCAGAATGCTGAGAGACATTTTGGTAAAT 298805 32 93.8 0 ......A........T................ | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 99.0 34 GCAGCCGCCTTCGCGCGGCTGTGAGTTGAAAC # Left flank : TACCGTTATGATGATGCTGATTACTTACGATATTTCGTTTGACGACCCCGAGGGGCAAAAACGCTTGCGCCATATCGCCAAACACTGTCTTGATTATGGCGTGCGCGCGCAATATTCGGTGTTTGAATGCGAAGTAACGCCCGACCAATGGGTCAAACTTAAACAAAAACTGCTGGCAACTTATAACCCTGAATGTGACAGCCTACGGTTTTATCATTTGGGCAGTAAATGGCGTAATAAAGTTGAACACCACGGCGCGAAAAGGGCTGTGGATATTTTTAAAGATACCTTGATTTTATAGTATTTTTGCGATCGCTAACGGGTAGTTCTCATGGAAGTGCCGTGAGGTTAGCGATTTTTATTGTTCTTTAATAATCAAAGCGTTATAAATTTTTCGTAGCGCGAAAGATATTATGCTACACTTAAATCACTCCTTAGCGTTCAGGTTAGCGAATACCAGGCTGCAAAGCCTTGTAGAATAATGCTTTGAACTATAGGGA # Right flank : TGTTCCTTTCTTTTTTATTTATAAAAAAATGACGAAACTATTTTGCATTATTTTTTGTAGCAGCTTTTAGTATGGATTTCAAGATTCGGCAAGCGGTTAAATTTTTGCAAAAGTTTGCAAATCTGTTATACTTCCCCTGAGTTGGTTAGGCAATCGCTGGTTTATTGAAGCCCTTAGTGCAGTAAAGTAAAGCCCGAAACGGGTGATAAGTGGGACAAATAAACGAGAGGAAAGTCCGAGCTACATAGGGCAGAGTGCCAGATAACGTCTGGGAGGCGTGAGCCTACGACTAGTGCAACAGAGAGTAAACCGCCGATGTACTAAGTGCAGGTAAGGGTGAAAGGGTGCGGTAAGAGCGCACCGCGTGGGTGGCAACATTCCACGGCACGGTAAACTCCACTCGTAGCAAGACCAAATAGGAACTCAATCGGTGGCCCGCCGAGAGTTCGGGTAGGTTGCTTGAGCGTATGTGTGAATATACGCCTAGAGGAATGATTGTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGCGCGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 1 247394-248485 **** Predicted by CRISPRDetect 2.4 *** >NZ_JANJ01000004.1 Mannheimia granulomatis strain PKL10 Contig_4_consensus_sequence, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 247394 36 100.0 30 .................................... CTCCACCACGCACGATTGAACCCTTAGAGG 247460 36 100.0 30 .................................... CTCCACCACGCACGATTGAACCCTTAGAGG 247526 36 100.0 30 .................................... TGATTTAGCTTGTTCTACTTGTGTTTCTGC 247592 36 100.0 30 .................................... TGTGCCATTGAACCAATCAAATAATTTATT 247658 36 100.0 30 .................................... CAATTATTCGAGCAGTAGCAGAAGAACTTA 247724 36 100.0 30 .................................... ATGTAACTTTTACTGCCAAAACTATTGAGC 247790 36 100.0 30 .................................... TGTATCACCGATTTTAACAACCAAAATTAA 247856 36 100.0 30 .................................... GCACCATGTTTTTAAATCATCAATCAATAA 247922 36 100.0 30 .................................... GAAAAAGAAGCGTCTCATTGAGGTTGAGAA 247988 36 100.0 30 .................................... AAAGAATATGAATTTATTGCAATTACATCT 248054 36 100.0 30 .................................... ATATTTCATTTTGGATATACCTTTTTATTT 248120 36 100.0 30 .................................... GGAATATTTCTTTTCCATCTAAACGACTTA 248186 36 100.0 30 .................................... AAACATAAAGCAAATAAGTTGGATATATGA 248252 36 100.0 30 .................................... ATTTTAGTATAAATACTTTATAATTTGTTT 248318 36 100.0 30 .................................... CTTTATAATCATCAACAGGAAAGTCTTTTA 248384 36 100.0 30 .................................... TCAAAATGGTTTTAAAGTTGAGCATTTTCA 248450 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : ATCCCTTTAGAAGAGGCTCCCCAGTTTTTCTTTTCACAGATTTTACGAGCATTTGGACGACGAATAGAACAATCGTTATAAGCAGCAAAATGGGTAGGATGTAAGCCTACAACCTTATTAGCTTGGTATTTGATATCACAAATTAAGGCGATTTCCGGCTCAATTTGCAGATTATCTGCATCTTGTGGAAAATTAATTGCATCGCTTGAAAGTGGGTAAGTTGCTAAGAACTGATAATCTCCTAGATTATCAGACGGTACATAAAACGGAAAAATTGCTTTTGGCTGGACAGCTTCCACTGTTTTCACTTTCATGAAATCAGCCGCCTCGCCTGCTTGCTCCAAATGCCCGGCAAAATTGCCAGCAACGCCTAAGCCGATAAAGTGTTGAGTAGTCATAGATTCTCCTTGCAGTAAAAGATTAATGAAATTCTACCGCTTGTTGAAAAGAATAACGAGTTTTTTGTGGTATAGAATTTGATTAGTGAGATAGGAAATTAG # Right flank : TCGAGCGGTCTCAAAGCCTGATAGGATAAGGTTTTAGCGAGTTTTCTCTTTGAGAAAAAACGCAAAAAAATTCTGAGTAAACGGTCTATTTTGGGAAAATTTTTGCAAGATTTTGCAGATTTTTTCTTGAAATAGACCGCTTGTTTTTGGTGGTTTTTAGCCAAAAAGTGTGAAATTAGCTCGCTGTGCTGAATAAAATTTCGGCAATCGAACAATTTATTTTATGTAGCATAGCCACTGTTTTCTTTCCTCAATTTGTTAGAAAAGTAGCAGTTGATTTGCATTCACTTTTTTCTCTTGCGGTTTTAATTCGCCGACTAAGAGCAGCATTGAAGCGAACTGTTTTTCAGTCACTTCCAAGCAGCGTATCGACCCTTCTTCGGGCAGATGTTCTGTCAGCCGTTTATTGTGTTTTTCCAGTGAATCCCGTCCTCGCACAATGCGGGTGTAAACCGAAAGTTGTAACATTTGATAGCCGTCTTTGAGTAGAAATTGCCGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA //