Array 1 45210-43921 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJHOA010000007.1 Clostridium perfringens strain P945 CP6-P945-500-103021_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 45209 36 86.1 30 A...ACA...A......................... TAAAGAACCTAAGGTAAAACCTAAAACAAA A,A [45195,45201] 45141 36 100.0 31 .................................... CATACAATAATAGACTGTAATAGTTCCGCAA 45074 36 100.0 30 .................................... ATAGAAAAAAATGCTACTAACATAGATAAA 45008 36 100.0 30 .................................... AATAACTTTATATTCTCTAAATTTGTTGCT 44942 36 100.0 30 .................................... AAAAGGACGAGATAGGATTAAACATACGAG 44876 36 100.0 30 .................................... ATGGAAATATGGGGATTAAGCGAAGGGGTT 44810 36 100.0 30 .................................... TTAGTGGAAGGTCTTAATTCAATTATTGTA 44744 36 100.0 29 .................................... TTAGAATTAGACTGTAAGGAATGTAAAGA 44679 36 100.0 30 .................................... TCCAATGGATATGGAGTATATGCCTAAGGT 44613 36 100.0 30 .................................... GCTGTAGATTATGGAGATTCAAGTATTATA 44547 36 100.0 30 .................................... TTGTTCTTTTAACATTGATGATGGTTGTAT 44481 36 100.0 30 .................................... GCATTTATAATACCTTCCATTTCCCCTGCA 44415 36 100.0 29 .................................... ACAGCTGCTAGAGTATTGGCTCAAAATGG 44350 36 100.0 28 .................................... AGAGCATATAGAAGTTATCGAGGAGGAA 44286 36 100.0 30 .................................... CAGGAATGCAGAGTTTATGTAATTTTATCT 44220 36 100.0 30 .................................... TCTTATATTAACCAATACTTCGATGTTGAA 44154 36 100.0 30 .................................... AACATTTACCATTGATCCTCCTAATGCAAC 44088 36 100.0 30 .................................... TTTTTTCAGGTTCTCATCCTGCGCAAAGAA 44022 36 100.0 30 .................................... TGATAAGTATATTAATCCTAAGAAGATTTT 43956 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 99.3 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTTTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCCCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATAATATTTAGTATAAAAAGCATTGTTCTCATTTAACTTAATAAGCTCAACACCATCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTCTCATCATACCAAAAAACAATATGACGTACTTTTCCATCACTTAATGGCTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAAATTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : AGGAAGTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAAAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-96.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //