Array 1 1074939-1077121 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFWT01000001.1 Clostridium perfringens strain NCTC9851, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1074939 29 100.0 36 ............................. GTTAAAAAAACCTCTTGATTTATAAATTTCATATAA 1075004 29 100.0 36 ............................. GCTAAACCAGCTTTTTTAAAATCTATATCAAAATGA 1075069 29 100.0 37 ............................. ACGGCAATGCACCAACATCAGCACCAGAAACAACTTT 1075135 29 100.0 36 ............................. AACCAATCTTGAGGAATTATAACTTTAGCATTATAA 1075200 29 100.0 35 ............................. TTACCATTAAATTTACCGTTTAACTCTCCCTCCAA 1075264 29 100.0 37 ............................. TTATAGAAAAAGTATAAACAAATTTAGGCTCTATAGA 1075330 29 100.0 36 ............................. TTCATTATAAAGATAGAAGAAAACTATCTATTTATT 1075395 29 100.0 36 ............................. ACCATAATTATAAGACTTACAAGACCTCTCTAACTC 1075460 29 100.0 37 ............................. TTGGTAATATCCCACGGAATACAAAATGGAAAAGCTT 1075526 29 100.0 37 ............................. TTTAATTGTAGATGCAATCATATCATTTTTATCCATC 1075592 29 100.0 36 ............................. TACTATCATGAAGGTAGAAAAGTTCTTGATGAACAA 1075657 29 100.0 37 ............................. AAGTACAAAAACATCTTAGATTATAAGCTAGGGGACA 1075723 29 100.0 36 ............................. ATATAATAAAGGCAAGTAAATAAAAGATACTTCTTT 1075788 29 100.0 36 ............................. TGCATGCTAGGGTTACTATGGATTATATTTATTTAA 1075853 29 100.0 36 ............................. GTTTATTCAATTTAACTTTACTATTATAACTACCTA 1075918 29 100.0 36 ............................. TTATGATTCTGCAATTCGAGAGCTTTTTGAGTACAA 1075983 29 100.0 35 ............................. TTGAATTTACCATCAAGTTCTCCTTCTAAAGCCTT 1076047 29 100.0 36 ............................. TTTTCTTAACATCAAATACCTTATTTTCATCACCTT 1076112 29 100.0 36 ............................. TTTAAAGGCTACGCTTCGCTATGTCTGCGACGCCAC 1076177 29 100.0 36 ............................. CCATTACAACCAATAACAGTCACAACACAATAAGTA 1076242 29 100.0 37 ............................. ATACAAACTATAAAAAAATAGCTAAGATTATTATTAT 1076308 29 100.0 36 ............................. AGCAAGTAAACTTGCTATATGATGTTTTTTATCTTC 1076373 29 100.0 36 ............................. TATCATACATAATATTACCGTCATTATCCAAGTTAC 1076438 29 100.0 36 ............................. ACTGTTGAATCAGGAATTTTAGACAATGCTTCTAAA 1076503 29 100.0 37 ............................. CTCATATCAGTTGGGTAGGATGGGAATCTATTACAAA 1076569 29 100.0 37 ............................. TCAGAATTTTTATTAATTTCACCTGAACTTTCTTCTA 1076635 29 100.0 37 ............................. GTTATTATTTCAACTTTTCTTTTTATCTCTTCATCCC 1076701 29 100.0 37 ............................. AGAAAGAAATCATTGACCCTATAGGGAAAAGCCAATT 1076767 29 100.0 35 ............................. TTATTCCCTAAAGCGTTCTTATTCCCTTTAGGAGC 1076831 29 100.0 35 ............................. TTATGTAACTAAGATTACAACTTTTATGAAATGGT 1076895 29 100.0 37 ............................. TTTATAATGCTCTCGTTGATCATCTGTTAGTTCAAAC 1076961 29 100.0 36 ............................. TTTTGATTTAACTCTACAAGCTTTAAGCAACTCTCT 1077026 29 100.0 37 ............................. TTGCTTTTTAAGACACATTCTAAATATGTGCCTTCAT 1077092 29 86.2 0 .................GAA....C.... | T [1077119] ========== ====== ====== ====== ============================= ===================================== ================== 34 29 99.6 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAATAGAGAATGAGTCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : TATATATAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATAAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTAATACTTAATACTTCCAATATATATGATAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGCATTTAGCAGTTTACATTTAATAGCTCCCTTGAAATTTCCTCAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //