Array 1 2615635-2618290 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028719.1 Streptomyces sp. endophyte_N2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2615635 29 100.0 32 ............................. TGGGGGTATCAGGGGCAGATGATCAAGAATAG 2615696 29 100.0 32 ............................. CTGACGGCCCCGGAGAGGCTGGTCCCGAGGGT 2615757 29 100.0 32 ............................. TACAACAAGCACCCGCACCGCACCACCACCCT 2615818 29 100.0 32 ............................. TTGACCTTGTCGGTCTCGAATGCCGCCCGGAT 2615879 29 100.0 32 ............................. ATGACCCCGGCCGAGCTGGACCGCCGCCGAGC 2615940 29 100.0 32 ............................. GCTCCCTGCTGTTCCGTCATCCCTGACTCGCC 2616001 29 100.0 32 ............................. AGTCGCCCACGACCCAGTTGACGAGGACGGTG 2616062 29 100.0 32 ............................. TCGCTCACGTCTGCCCCCTGTTGCGTATGCGG 2616123 29 100.0 32 ............................. GCGCGCTCCACCCTCCAGATCGTCTCCGAGAC 2616184 29 100.0 32 ............................. GCGTAAGCGGCAACGCCAGTCGTGGTGTCGGG 2616245 29 100.0 32 ............................. CATCCGGACCGCTCTTGGAGCAGGGCCCAGAT 2616306 29 100.0 32 ............................. AGAGACTTCACCGCCTACCCCATCGGTATCCG 2616367 29 100.0 32 ............................. CGGATGATGCTGCGGGCGATGCCCGGCGCCGC 2616428 29 100.0 33 ............................. GCTCATTTCGGCTGGTCATGACGGCCTCGATCT 2616490 29 100.0 32 ............................. CGGGCGCTGTCGTCGGCGGGGTCGCCGCAGTC 2616551 29 100.0 32 ............................. AAGGCATCGTCGTGGTGGGCAAGGCGTTGGTG 2616612 29 100.0 32 ............................. CAGCGCCTGGTGTCGTCGGGCACGGCTTCCAG 2616673 29 100.0 32 ............................. GGCTTCCTGTGCGAGGCGCGGAGCACCCGGGA 2616734 29 100.0 32 ............................. GGTGTGGGCCAGACGGACACCGACAGCAGCTC 2616795 29 100.0 32 ............................. TCCCAACCGGGACGCGGCGACCGGGTGGCGTG 2616856 29 100.0 32 ............................. CCGTCCGGCTCCAGGTCGCCGTCGTGGAGCAG 2616917 29 100.0 32 ............................. TCCTCCCACGTCTTGCCGACGACCTCGGCGCC 2616978 29 100.0 32 ............................. AAGCCGACCCTGCGCGTGCCCTGCCCCTCGTT 2617039 29 100.0 32 ............................. CGGCCTGAGCAGTGCCGACGGCCGAATCGTCA 2617100 29 100.0 32 ............................. GCCCACTGGTCCAGCTCCGGCTCGGACAGGCT 2617161 29 100.0 32 ............................. ATCACGTCGGGCGCGCAGTAGCTCGGCTGGTT 2617222 29 100.0 32 ............................. GTCTCGCCGGTGTCCAGCAGGCCGTTGTTCTG 2617283 29 100.0 32 ............................. CTCGTCATCACGGCGGCGGGGGGTGATCCGGC 2617344 29 100.0 32 ............................. ATCGCGGATGCGCCCTCCGGTCTGATCGACCT 2617405 29 100.0 32 ............................. TCGGCCTCCAGGTGCTCGCGGCCGAGGGCTGC 2617466 29 100.0 32 ............................. CGGAGCACTCCCCCGAGCCGGCCGAAGAAGCC 2617527 29 100.0 32 ............................. GCGGAGTGGACGCAGCAGGCCGTGCAGCTGCT 2617588 29 100.0 33 ............................. CTCGGGTTGTCGGTCGTCCTACTCGCTGAGCTT 2617650 29 100.0 32 ............................. TCGGGGCGCTGCTCGGCGTGCCGGTGCTCGTC 2617711 29 100.0 32 ............................. TTCCGCCTGATGGAGGGCACCCCATGGCAACA 2617772 29 100.0 32 ............................. AGATCCTGGACTTCCAGCACCGCTACGTCTTC 2617833 29 100.0 32 ............................. GCGCCCTGCTCATCACCACGCTCGCCGTGCCG 2617894 29 100.0 32 ............................. GGGCAGTAGTCGGGGCGCTTTCCCGGGTGGAA 2617955 29 96.6 33 ............................A CGGCGGGCCGCCTGTGCACGCGGGTGCCACCAG 2618017 29 100.0 32 ............................. GCCGGGTGAGACGTACTGGGCGTTCGCGGACG 2618078 29 100.0 32 ............................. TGACAAGTCCTCCAAGGAATTCGCACTCCCCC 2618139 29 100.0 32 ............................. AAGCGGTGGTCGCTGACGTCGAGCGGCGCGTA 2618200 29 96.6 32 ..........................T.. GACCGCCTCGCCTAACTCTGAAGGACACCCCA 2618261 29 79.3 0 ......TT..T..C...A..........G | A [2618286] ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Left flank : GGGCGGCGGGCACAGTGCCCCCTGGGCGGATGCGGGGACCGGAACTTCAGCGCGCGGCTCACTCTGCACGCTCCAGCCACATCTCCCCGAAGCGGACTCGCCCAGCGGCCTTCCTCTTTGTCGAGGCCCTGTTCCGCCGCTGACAATCCGACTGCGCCGGCCGTGCGCCAAGGCTGTCCGGCGGGAGATGGCGTACGACCGAATCCGACTGCGTCAGCGTCCGGCATGGCTGTACAGGCGCCCAACGCACTGCTGCTACGACCCACGTGGCAGCCGGGCCAGGAGCTTCACCACGGAGCGCTTACCGATATCTTTCGGGAGACGGATCCCACCAACGGGTCCTATCCATAGGACTGTTGGGTACTACCTCCACCTCCCGCGCCAAGCATGCCCAGCATCTGCGCAGCACCACACAAACATCCGGAAGAACCGAAATGTCCCCTTCCTCAGAAGTAAGGAGTTCTACCTCCCCACCCCACCAAAACCCCAGCTCACGAACT # Right flank : GGAACGCGGGCGTCAGGCGTCGGGCTGCTTCGCGGTCCCGCCTATCAGGGCGATCCGCACACCGACCAGCAGCTCGTCCCGCGTTCCACGAGGTCGTTCCAGATACTGGAGCCTCAGCCTTAGGGCGTTTCCTTCAGATCATCTGATCGTTGGTTGATGTGTGTCGTTGACTGATGCCCAGTGGGCGAGGATCGAGCCGTTGCTGCCGGACCGGACGCGTGATCGCCGGCAGGTGATCGACGCGATCGCTTTCACGTACCGCCCCGGCACGCCGTGGACGGACTGCCCGAGTACTTCGGCTCGCGGAAGTGCGCCCACAACCGGCTGTGGAAGTGGGCCGCCGACGGCACCCGGGAGAAGCTCCTCACCTCCCTGCTCGCCCAAGCCGACACCGATGGCAACCTCGGCTGGATCGTCGCGGTCGACTCTCCACGATCGCCCGGGCTCATCAGCACGCCGCCGGGGCTCGTCAAAAGGGGCCCCGCCCGGCGAGCCCTACC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2629439-2630680 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028719.1 Streptomyces sp. endophyte_N2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2629439 29 100.0 32 ............................. TTGGTGGTGACGTGGCTGGTGTAGCTGTCGAT 2629500 29 100.0 32 ............................. TGAACCCGATGGGCTCGCCGCCGGCCTCGTAG 2629561 29 100.0 32 ............................. CACCGCCAGTTCAGGACGAAGCAGCCGATGCC 2629622 29 100.0 32 ............................. GACGGATCAGATGCTTCATGGGGCTATGGCTC 2629683 29 100.0 32 ............................. ACGTCCTCGGACAGCAAGCCGAAGAAGAGCAA 2629744 29 100.0 32 ............................. GAAGGTCGGCTCGCCGGATCTTCAGCGGTTCG 2629805 29 100.0 32 ............................. ACCAACGGGATCATCAGCTTCACGGCCTGACG 2629866 29 100.0 32 ............................. AGCTACACCCCTTCCCTGGTCAATGCCGGGTC 2629927 29 100.0 32 ............................. GTGACGTACCACCTCTCCGAGCAGGCCGAGAT 2629988 29 100.0 32 ............................. ACGGCGGCGAAGAGGGCGGTGGTGTCGGTCAT 2630049 29 100.0 32 ............................. GACCGGTCCGGCTACACCTACTTCGCCACCGC 2630110 29 100.0 32 ............................. GGAGTCTCGGTCGGCGTGACCTTGTACAGGTC 2630171 29 100.0 32 ............................. CCCGCCGTCACCCAGCTCGACAAGCAGCTCGT 2630232 29 100.0 32 ............................. AACGCGGTCGTCGCTGCCGGCACAGGCCCTCA 2630293 29 100.0 32 ............................. AACGCGGTCGTCGCTGCCGGCACAGGCCCTCA 2630354 29 100.0 32 ............................. ATCACGAACGTGCAGCAGGCCAACCCGAACCT 2630415 29 100.0 32 ............................. GCCACCGGGTCCTCGAGGACACCGTCGGCGTC 2630476 29 100.0 32 ............................. GTCGACGCCGTACTCGCCGCCCCACGCCTCCC 2630537 27 93.1 32 ........--................... TTGACCGCGGTCTTGACGCCCTTGCCGCCGCC 2630596 29 86.2 27 ............TC.......A...C... CGTGCATGTAGGTGGGCCAGGAGAGAG 2630652 29 69.0 0 .C....T...T.TC.......A.C.C.T. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 97.5 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CGGCTCGTCGAGGCCGGCCGCAACTACGACGGTCCCGCTGACGAGGAGCCCCTCTGGTGACGGTCATCGTCCTCGCCAACTGTCCACCGGGCCTGCGGGGCTTCTTGACCCGCTGGCTGCTGGAAGTCTCCCCCGGCGTTTTCCTGGGCTCACCCTCGGCCCGGGTACGCGACATCCTGTGGGACGAGGTCCGCCAGTACCGAGGCAAAGGGCGCGCCCTACTCGCCTACCAGACAGACAACGAGCAAGGCTTCACCTTCGCGACCCACGAACACGCGTGGCACCCCACCGATCACGAGGGCCTCGTCCTCCTCAAACGCCCCTCACCCATCACGAACTCGCCAGCACCACCACGGCAGGGCTGGAGCAAGGCCGCCAAAAGACGCCGCTTCGGTAACTCCTGAAGCCTCCCCCCACCTATCAACTTGCCCCGAAATGCCCCTTCCCTCGCAAGTAAGGCACACTCCATAACCCACCAACAAAACCCCAGCTCACGAACT # Right flank : CTCTTGCGTGCAATTCTCCGTGGCTCCGCTGTAGGCAGCGGGCGTCGGCATGCGCTGCGTCGGCTCGGTCCCGGCACGCCGAACCCCGCCGTACTGTTCCTTGTGTGACCACTCTCGAACGCGCCCGCTGCGAGCTCAAGGCCCACCCCCTCGCGCTCGACGCGGCCCTCGCCGCGGCCGTTCTCGTCTGCATGGTCGCCGGCTCCCTCGCCACTCCCAAGGACGGGCAGGGCGTCACCTGGGGCACCCACGTCCCCGCGCCCCTGAGCCTGCTGCTGATGCTGCTGGCCGCCGTCGCCCTCGTCTTCCGCCGCCGCGCCCCCCGCACCGTCCTCGCCGTCACCGGCACCCTCTCCGTCGTGGAGTGCGTCACCGGCGACCCCCGCGCGCCCGTCACGATGTCCGCCGTCATCGCCCTGTACACCGTCGCCGCCACCACCGACCGCACCACCACCTTCCGCGTCGGCCTGCTCACCATGACCGTGCTGACCGCCGCCGCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2637620-2637164 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028719.1 Streptomyces sp. endophyte_N2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2637619 29 100.0 32 ............................. TCTCACCATGTCGCCATCTTCACGGACGGAAG 2637558 29 100.0 32 ............................. GGGGGCCCGCCAGTACGGCTGTCGGCCGTGAC 2637497 29 100.0 32 ............................. CGGCACTGACCTGGTCTTTTGCGGGTTCTGAG 2637436 29 100.0 32 ............................. CACCTCGCCCGCTACTACAGCGGCCTGGGCGA 2637375 29 100.0 32 ............................. GAGCCGGCGTCGGTCAGCCAGCTCCTGGTCGA 2637314 29 100.0 32 ............................. CGTGAGCACGCGGCGCACCGGTCCTCGTACTG 2637253 29 96.6 32 ............T................ ACCACACTGCGGACGGGCACAGCTACTACGTC 2637192 29 72.4 0 ............T....A...T.CCCT.A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 96.1 32 GTGATCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : GACGCGGTCCGCCGACTCGGCACCCCCCTCGCGGACGACGAACTGGAACCCTCCGACCTGATCCTCCCGGCCCCGGACGCCTCCCTGGCGGAGGTCCGCCTGATGCTCAACGAGGACGGCCTGATCCCGGACTGAGCGTCCGGGACCGGGGCCCGTTCCCCGGCAGTGCGGGAGATGCGCGGAAACAGCCGTACACCGTGCTGGTGGAACCGTCGCGCAGAAGCCGCGGATCTCCTTTCGGGATCTGACCGGCGGCTGCACCTGGTCCGCACAGCGGGGAGGGTCGGCAGCCAGTGGATGCTGGCGCGAGTGCTTGCAAACACCGTCCGCACGGTGATCACAACCAACCAGCGGGCGCAGCACCGTTGAATGTTTCCGGTACGAACCCGGTCCAGCATCTACCCAGCACCGAATGAACAACAGGAAGAACCGAAATGTCCCCTTCCTGAGAAGTAATGAATTCCGCCCCCCTGCTTCACCAAAACCCCAGCTCACGAACT # Right flank : TTAGCTGTCGCGGGCGGTCGGGTGAATGGGCGCAAGGTCGGACCTTGGATGGCCAGGGCTCGTACTCGCACCAGGGAGGCGCGCATGTTCGCGCGAGAGCGGGCGGGGTGTCACCTGGGAGCAGTCGAGGGAGCCGTCCCCTCAGCGGTCAGGCGATGAGGAGATCCGTGTAGTCGACGAACGTGGTGCTGACGTCATCGATGTCCGCCACGAGACGCAGATGCCCACCCAGAGCCGCGATGTAGGCGGCGATGGACTCGACCTGCATCCGGTCGATGTCGCCGTTCTCCATCTGCGAGACCCGGACCTGCGAGACACCCATCTTGTCGGCCACCTCCGTCTGGGTCAGGCCGCGTCGGCGGCGGAGTTCGGCCAGATGGTGCCCCAACGTGGCCGCCTCCCGGGACGCACGGGCTGCCGCGACGCGTTCGGGCGCATCGATCCCCGGGTCCGCCGACCGCCTGGCGTCGAGCGACGACTCCCACCGGTAGTGCTTGCTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //