Array 1 108972-108418 **** Predicted by CRISPRDetect 2.4 *** >NZ_CATK01000001.1 Salmonella enterica subsp. enterica serovar Agona str. 07.O.05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================== ================== 108971 29 96.6 68 ......................G...... GTTAAGGGGGAGTGAGATGCAGATGGGGATAAACCGAAAAATAGTCCTGAACGATAGCCCGCGCGGTC 108874 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 108813 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 108752 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 108691 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 108630 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 108569 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 108508 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 108447 29 93.1 0 A...........T................ | A [108420] ========== ====== ====== ====== ============================= ==================================================================== ================== 9 29 98.5 37 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCCCGCGCCAGCGGGGATAAACCGCTGTGTGGTCTGTGCATAACGGTGTAACAGAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGGAAGTTTGGGCGCTTTCAATATCTTCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAATATTCCTGAACGATAGCCCGCGCGGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGAGTGGCTTGAGACTGTCGTCAAGCCTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTATAACGACACTAAAACCCGCCAGTTATAGTGTTCCCCGCGCCAGCAAGCCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGTTCCCCGCGCCAGCGGGGATAAACCGATTTTAACGGCAAGGTCGACAGGAGATACCAC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 109659-109203 **** Predicted by CRISPRDetect 2.4 *** >NZ_CATK01000001.1 Salmonella enterica subsp. enterica serovar Agona str. 07.O.05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109658 29 100.0 32 ............................. AGCGAAAATAAAGACGACGAACTCGTCACAAC 109597 29 100.0 32 ............................. CGCACCTGCCTGGCCATGACCCTGCCGGAGCT 109536 29 100.0 32 ............................. GTCATTTTCTTGTTAATGGCGCTTGCATTAAC 109475 29 100.0 32 ............................. CTGTGTGGTCTGTGCATAACGGTGTAACAGAG 109414 29 100.0 32 ............................. CTGGGAAGTTTGGGCGCTTTCAATATCTTCCA 109353 29 100.0 32 ............................. AAAAATATTCCTGAACGATAGCCCGCGCGGTC 109292 29 100.0 32 ............................. CAGGAGTGGCTTGAGACTGTCGTCAAGCCTGA 109231 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGGTGCTGGCCGCGCTGGCCGCAGAAAAATTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTAGCCTTCAGACACTTTAGCCAGGTTCCCTAGTGGTCCCCGCGCCAGCGGGGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACACTTTAGCCAGGTTCCATA # Right flank : TTTTATAACGACACTAAAACCCGCCAGTTATAGTGTTCCCCGCGCCAGCAAGCCATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTGTTCCCCGCGCCAGCGGGGATAAACCGATTTTAACGGCAAGGTCGACAGGAGATACCACGTGTTCCCCGCGCCAGCGGGGAGAAACCGGTTAAGGGGGAGTGAGATGCAGATGGGGATAAACCGAAAAATAGTCCTGAACGATAGCCCGCGCGGTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGATCATCACCCAGGCATTTTCTGGAATATGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAATCCCGATGATCATGAATATTTCTGGCGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTAAAACGGCGCTTGAGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 109920-109769 **** Predicted by CRISPRDetect 2.4 *** >NZ_CATK01000001.1 Salmonella enterica subsp. enterica serovar Agona str. 07.O.05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109919 29 100.0 32 ............................. GAGGTGCTGGCCGCGCTGGCCGCAGAAAAATT 109858 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 109797 29 79.3 0 ...G....................NNNNN | ========== ====== ====== ====== ============================= ================================ ================== 3 29 93.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACACTTTAGCCAGGTTCCATAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCGAAAATAAAGACGACGAACTCGTCACAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCACCTGCCTGGCCATGACCCTGCCGGAGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCATTTTCTTGTTAATGGCGCTTGCATTAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGTGTGGTCTGTGCATAACGGTGTAACAGAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGGAAGTTTGGGCGCTTTCAATATCTTCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAATATTCCTGAACGATAGCCCGCGCGGTCGTGTTCCCCGCGCCAGCGGGGATA # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 126879-126206 **** Predicted by CRISPRDetect 2.4 *** >NZ_CATK01000001.1 Salmonella enterica subsp. enterica serovar Agona str. 07.O.05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================== ================== 126878 29 100.0 32 ............................. GCGACTGGCTGGTCAGCACGCCGTTAGTCGCC 126817 29 100.0 32 ............................. AAATTGTCTGATAGATTGGCAAAAGCGATGGA 126756 29 100.0 67 ............................. GCATCCCGGACAACAGGATCATCCCATTTAAACCGTTTCCAAAAATCACGTCACCCGTTGTGATCTG 126660 29 100.0 32 ............................. TTTCCAAAAATCACGTCACCCGTTGTGATCTG 126599 29 100.0 32 ............................. TTTCCAAAAATCACGTCACCCGTTGTGATCTG 126538 29 100.0 32 ............................. CCAACTGGCCTAAAGCAAATCCCGGCTTAGGC 126477 29 100.0 32 ............................. GTTAAGGGGGAGTGAGATGCAGATAAAAACGA 126416 29 100.0 32 ............................. TTTCCAAAAATCACGTCACCCGTTGTGATCTG 126355 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 126294 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 126233 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= =================================================================== ================== 11 29 98.1 36 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //