Array 1 49974-49086 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZY01000042.1 Clostridioides difficile strain WA151 isolate WA151, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 49973 29 100.0 36 ............................. TGCACAGTAGTAGCAGTAAGATTGCTTGTTGCATTA 49908 29 100.0 37 ............................. ACATATGTTTTGATACAGATTTCTCTACAACATTCAG 49842 29 100.0 37 ............................. TTTTCAGAACATACTTCATCAAGAACTTTCTCTACTT 49776 29 100.0 37 ............................. GACAATACAGAAGAAGCAACAGAAAGCAATCCCATAA 49710 29 100.0 37 ............................. GATATAGATGCAGAGGATGCTTTAGAACGTGTTCAAT 49644 29 100.0 39 ............................. ATTTAACAAAAGGTGTGGGGGGTGGGGGTCTTGCAACCA 49576 29 100.0 37 ............................. CATCATTGCCCTTTATAGCTTCCATTAATTCAGTTCT 49510 29 100.0 37 ............................. TTGGACAAGATTGTTTTCATAGATACAGGACTAGAAT 49444 29 100.0 37 ............................. TGACCTCCTAAGGATTTTGTTGCAACTCTTTTAACCT 49378 29 100.0 38 ............................. ATAGTAGAGGTTTTAGGAGCACCTGCTGAACTTCTTAG 49311 29 100.0 36 ............................. TTGTAATAAGTATGGCTTCATCTTCATAACTTTCAT 49246 29 100.0 38 ............................. TAAGATGTCTGAGGAAATGCAATCTTTAAATTATTTTG 49179 29 100.0 36 ............................. ACGTTTCGCAAGGGATTTTTTAAAGCGAATGGATAA 49114 29 82.8 0 ................A.CA...T....T | ========== ====== ====== ====== ============================= ======================================= ================== 14 29 98.8 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGAGAGGATTCAATCTATATTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGCGTATGATAACTGTTATCAATTGCACTACTGTTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATGATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGATATAAATAAAATCATGGAAATATGGGAAGAAAGCACAATCAAAGCACATGGCTTTATAAGTAAAGAATACTGGCAAAATAACCATAATGCTGTTAAAAATGAGTATATACCTATATCAGATACATTTGTATATGATATTGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAGCCTAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAATTGAAAAATATAAAAGTCTAAGTTTAGCAGTATACAAAGATAATAAAAAAGCAGTTATTTTTTATAATAAAAAAGGTTTTAATGTAGTAAAAGAGCAATTAAATGAAGACTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGAGTACAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 17841-19189 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZY01000032.1 Clostridioides difficile strain WA151 isolate WA151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 17841 29 100.0 36 ............................. CTAAAAATATGCTCCAATCCAAAGCCATTAGCATCC 17906 29 100.0 37 ............................. TTGACAGAAGCATTTGAAACTGCTGATCATAATTACA 17972 29 100.0 37 ............................. ACGAACATACAACATATAAAATATAGATGTTATCATT 18038 29 100.0 38 ............................. ATAGGCAAAATGTAGACTTAGCAGTACAAATCCATTTC 18105 29 100.0 36 ............................. TGTATAGAATTAAGAATTTTTTAAATACTAATTATA 18170 29 100.0 38 ............................. TTCCAAGTGAGTATGTATGAAGAAATAACTTTTTTAAC 18237 29 100.0 38 ............................. GTGATGTAGAATTTGTTTGATTTTGAAGAGCTCTAGTA 18304 29 100.0 36 ............................. TAACGAAACTCGTGACGAGGGGAATAACAATAACAA 18369 29 100.0 37 ............................. TCGTTCCTCTATTAGCTAATATTCCAATAAGTGCAGC 18435 29 100.0 37 ............................. AAATTTTTAAATGATGAACTTATTCAAGTCACAGTAT 18501 29 100.0 36 ............................. TCTGCTCCCGACATTTTGTCTTTAAATAAAAAGCCA 18566 29 100.0 36 ............................. AGTTACAAAGCTATATATGATGACCCAGATATACCA 18631 29 100.0 39 ............................. GTATCATAATCTATACATTCATCATAGTTCTTTTTTAGC 18699 29 100.0 37 ............................. ATTATTGATGATATGATTAATAAAATAACTAATAAAT 18765 29 100.0 37 ............................. ACATATGCTTTTAATTCAACTGTTGAAGATGAAATTA 18831 29 100.0 37 ............................. AAATATATATCAGTTAAGCAGAGAAAATACTGGTCTT 18897 29 100.0 36 ............................. GCAATCATTCCGACTAAGTATAATATTGCAAAGTTA 18962 29 100.0 37 ............................. CTTGTACATGTGTCTCATATTAAATTTAGAGTTTATA 19028 29 100.0 37 ............................. GTTGTATTACCTCTGTAATTATTTTTTCCAAAATTAC 19094 29 93.1 37 .C..............T............ TGTCCTAACCTAACAATATATTGGTTACCTCCACCTA 19160 29 86.2 0 ...............A......AT.T... | G [19181] ========== ====== ====== ====== ============================= ======================================= ================== 21 29 99.0 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : CTACAATTTATAGAGTGGAGTTCATACAAAAGATAATCCTCCCAACGTATAGAAGGGAGGTGAATATGTATGGATAATTTTTTACAAGGTATATTAGCAAGTTTAGTTGCTAGTTTAATAGTTTACTTAACTAGTAAGTTATTTAAAAAAGTAAAAAGCCACTCTGGCAGGAGTGACTTTAGTTTTGAACTAGAAATCAAGTTCAAAAAGAATAAACATTAGTATTTTAACTTCACTCTACGTCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTGCAGATATTCAAAAATAATATTTTTATGATATAATAAAGATATAGAAATTTTGCAGTGTTCGATTTTTTGAATAAAATAGGGCTTAAGCATTGAAATATAAGGCGTTGAAGATGTATGATAAGTGTTATCATTTGCACCACTGCTCGCTCACTGCAAATTTTAGAGTGTTGCATATGTGTAAGTGTTGGAAATGCTAAGTTTATTTTGGG # Right flank : GAAGTTACAATGAGTACAAGAATGTTTCTATTTATTGTAACTTTTTTTATTACAAACTTAAATTTATAGTATATTATAAAAATCATTATAAAAAGATGATTTAATAAAAAAATATAATTAAAAAAATGATTAATAATCTATAAAAATGGAAAAAGCATCCAATATCCTACAAAAATATATTTTTTTATTACAATTACAAGTTTTTATTGCATCTATTTAGCAAAAGTATTATTATGCAAGTAAGATAATTATCAAAGACAATTCTAAATAGTCTGATTTAAAAGTACAATTAAAGGATATAAATAGGAATAATTTATAAATATTACAGAAGATTTATAACTAAAATTACGAATGTAAGTTTGTTATATGGGGTAGTTGTGTGGATGAATCAAATAAATTAATATTAGAATTGAATAATATTTTCTGTGAATTAGAGAGTATTAATAAATATAAGTTTAATGAATATAAAGAAATTGTTAAAAACTTACACAACAAAAAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 24549-24122 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZY01000187.1 Clostridioides difficile strain WA151 isolate WA151, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 24548 29 100.0 37 ............................. AAGTTAACAAGAGATAATGTTGGAGAAGTAGCAAATA 24482 29 100.0 39 ............................. ATTTTAGATGAGGCAATAAGTGTTAGACCGTATAAATGC 24414 29 100.0 37 ............................. AAACAATGGCAAGATATAATAGTAAAAGAATATAATT 24348 29 100.0 36 ............................. GTCTATAAACATTTATAGAATGACTCCAAACACCTC 24283 29 100.0 37 ............................. GCGTCATTTTCAATACTTAAAAAGTCGAGAGAAAGTA 24217 29 100.0 36 ............................. GGCGATAAAATAAATGTTCGAGCTTCTTATACAGAC 24152 29 93.1 0 .......................T....A | AG [24129] ========== ====== ====== ====== ============================= ======================================= ================== 7 29 99.0 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : CAGATATTCAAAAATAATATTTTTATGATATAATAAAGATATAGAAATTTTGCAGTGTTCGATTTTTTTAATAAAATAAGGCTTAAGCATTGAAATATAAGGCGTTGAAGATGTGTGATAAGTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTAAGAGAGTTGCATATGTGTGAGTATTGGAAATGCTCAGTTTATTTTGG # Right flank : AGTTACAATGAGTAGAAGAAAGTTTCTATTTATTGTAACTTTTTTTATTACAAACTTAAATTTATAGTATATTATAAAAATCATTATAAAAAGATGATTTAATAAAAAAATATAATTAAAAAGACGATTAACAATCTACAAAAATGGAAAAAATATCCATTATTCTACAAAAATAGATTTTTTTATTAGAATTACGAGTTTTTTATTGCATCTATTTACCAAAAGTATTATTATGTAAGTAAGATAATTATCAAAGACAATTCTGAATAGTCGGAAAACATTTCTAGAAATGAAAAGGTATAATTACATATTTTATTTAAAATTCTTTGGGAATTTTTAACTAAAAATAAGAACGTAAGTTCTGATAATAGGGGGGATAATAGTATGGAAGAAGAAATTTGTTATAAACTATTAATTTTTTATGAAGAGCTAGAAAATTTAAAAAAGAAGGATGAAGTGATATATAGCGAATGTAGAGAAGAGCTAGAAATATTACTTAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 5283-5507 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZY01000188.1 Clostridioides difficile strain WA151 isolate WA151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 5283 29 100.0 37 ............................. GAGTTCCCTTTTAATTCATTATATCGTTCAGTTAAGT 5349 29 100.0 36 ............................. TTTGAAGTAAGTGGTACTGGAGCTTTAGCAGGTTGT 5414 29 100.0 36 ............................. GGAAAAATAATTCAATCGGTTGCTGTTCCTCAAGGC 5479 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : ACTATTATTATATAACTAACATTTAAGTGATATTTAAGAAAAATATGAGATTACTGATATTTTACTGATATAAAACTGAATGTTATTTAAAGAGAGCCTTGATTATATTTTTAGAAGCTTTTTATGCATATTATCTAAAATATGAGAATATCTATTCATAGTTATTTTTATATCAGTATGACCTAATTTTTTAGAGAGAATTTTTATATTAAATCCAGTTAGAAGAAGACTTATTAGAATATCCAATGTAGTAAGTACTAGCAGATATTCTTAAATTGATAAATTACTCCATTTTAATTTTATAGGTTAAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGCGTTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTAAGAAAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTAGG # Right flank : TTTGCAACAAGTATAGGTAAAATACTCCAATAATTTATATAGCATTTTCTCCTTTAAAATATAATTATTTTTTATCATTTGTAGTAAGTAATTACCAGATAACATTGATTTTAGTCTTATTGATTAAAATATAAAAGCAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATAGAATAAAACTTAATGACAAGATACTAGATATAAAAATAATTACCTTATAAATAGATTGAAATTTGTGAATATTAATACTATAATTTAGATATAAGGAGATGCTCTTATAAACTTAAAGGGTTTGTACTACTTGTACTATAAGTATTGATAATATTAAAGTATATATACCATTTGTATTTGTTGAAAAAGATTTTAATAGTAATACAATGTTAAACAACACAAATATCAAAATTTAATATTGATAGAGGTATAAACATTATAAAAATAATTGAAAATAAAAAAATATTTAATCCAACTACAATATAAATTAGAACTACACTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3391-4472 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZY01000072.1 Clostridioides difficile strain WA151 isolate WA151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3391 29 96.6 37 .C........................... ATAATCTAAGAGTGGAGTTCATACAAAGAAAAAACCT 3457 29 100.0 37 ............................. ACGAAGATTTTGGATATTATTTAGGATACTTAGGTGC 3523 29 100.0 38 ............................. TAGAAAAAGCAGAACCTCCTGCTTCTGCTTTTATACCA 3590 29 100.0 36 ............................. GGTGGACCAGTAGCATTTTTATTACCAAAGGGTGCA 3655 29 100.0 37 ............................. AAGAGCAAATCCATCCTGTTTAACTGCAATAAGATAT 3721 29 100.0 36 ............................. GACCACCAAGTGCGCTTAGCGCGCCTTTCCATAAGT 3786 29 100.0 36 ............................. CTTGAATTAGTTTCTTATAGGCTATACCACCTGCAT 3851 29 100.0 38 ............................. AATAATAATCTAAAAAATAGTAAAGATGATATTGTACC 3918 29 100.0 36 ............................. CTCCTAAAAAACTCATTAAAAAGTTCTGTTATTAAA 3983 29 100.0 37 ............................. TCATTTTAGAAGCTTCATTGATTGGCACTGTAACTTG 4049 29 100.0 36 ............................. TTACAGCTAAAAATACTGCACTTAATGGTTTCATAC 4114 29 100.0 38 ............................. AATCATCCAATTCAAGAAAGAGCTTTAAAAGAATTACA 4181 29 100.0 37 ............................. AGAATAAGCGCACGTTCTTCTAATGTTAAGTCAGCGA 4247 29 100.0 36 ............................. AATATAGCTATTCAATTTTATCCCAACCTTTAAAAC 4312 29 100.0 37 ............................. GGATGTTACACATGTGCAAACTCAACAGAGGAAGCCT 4378 29 100.0 37 ............................. TTCGCAACTTATGATGGTGAAATGATTACATTAACAG 4444 29 86.2 0 ......T........AG...T........ | ========== ====== ====== ====== ============================= ====================================== ================== 17 29 99.0 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : CAAAGAGTGACTTACTAGTGGAATTTAAATTTAGATTTAAATCCAAAAAATAAACTATGTTTATGATGAACTTCGCTCTACGATGAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAATAAAAAAATTTTAACATTAATTATTGTCAGTTTTGACAATAATTAATGTTAATTTTTATAAATAATTAATAATGAGTCTGAATTAATGAATAAATTTAATTGTAAAAGTTATAAATAAGGAAGCACTTACAAATATGTAGGTGCTTCTGAATTTACAAATTATTCCATTTTGATTTTATAGTTTAGATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGTTCGATTTTTTGAACAAAATAGGGCCTAAGCATTGAAATGTAAGGTATTGAAGATGTATGATAAGTGTTATCAATTGCACTACTGCCCGCTCACTGCAAATTTAAGAAAGTTATATATGTGTAAGTGTTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAAGCAAAAGATAGGAATGATAATTTTAAAACTCCAAACTTTTATATTAACAATGTGGAGAAAAACTAAATAGAAGAAAGAAGCACTTATTTTTGGTAGGTGCTTTTATTTTGCTCAAAATATTTTAAATCAATAGACTAAGTTCTTATTTTTAGATAGAATTATATTTGAATAAAGAATTTAATAGGGGAGAGTTCATTATGTGGGGAAAATTTAAAAAATTAAGTTTGTTGAAGAAAATTTTAGTGATATTTTTAATATACTTTGTTGTATTTACAGTATCAATGATGATTCATCAAGCGATACGAGATTCAAAAAATAGAGATGAAGTAAATGAAGGAAATATTACAAAAGAAAATATAATTAGCGAAAGAGAAAAAGAAGATATTTATAAACAAGAGATGCAAGCAAAAGTAGACTCTATGATACCAGAAGACTTAAAAGATAAAACAACATATTATGTTAACATATTAAACCCAACAAAAGGTGAGGGATATAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 7033-7661 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZY01000072.1 Clostridioides difficile strain WA151 isolate WA151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 7033 30 100.0 37 .............................. TCAGATTTGCAACATAAGCTCTACTCCATCTATCTGT 7100 30 100.0 37 .............................. CTTCCTATGTTCTAAGCATAACATAATCTGTTCCTTT 7167 30 100.0 36 .............................. ACTATAGAGGTGTATAACTTTTTATTTGAATTATAC 7233 30 100.0 36 .............................. GAGTTAACTAAATTTTCGCAAGAAGTAGCAAACTAT 7299 30 100.0 36 .............................. ACCTGCAAAACTAGCCAGATAAGCGTAAATAGCTTT 7365 30 100.0 37 .............................. AAAACGTCCTTTGTGTAATAAATAGATAAAATTATAC 7432 30 100.0 36 .............................. TTAAGAGCCTGTTTAACTAAAGTACAAAATCTCGCT 7498 30 100.0 36 .............................. TTATAGAAGATTCCTTCATATAGCGTTATATTCTTG 7564 30 100.0 37 .............................. TCTAAGTAAAATAAATTACAAAGAGTAAATAACCATT 7631 30 96.7 0 .............................A | A [7656] ========== ====== ====== ====== ============================== ===================================== ================== 10 30 99.7 37 GTTTAAAAGTAACATAGGATGTTTTTAAAT # Left flank : TAGTTTAGTTTTGAGGGGGATTAATACAATGTGTAAAAGTTTGCTTAATGAATATAATTTAAAAACTGATAAAGAGAGAAAAGATTTTATAAAGTTTGCTATACTATTATATAAGTTGAAACAGGACGACAAAGAAAAGTTTTATGAATATACAGATATATTGAAAGAAATTCTTAGAGAACAACAAGAGAGAGAAAATAATTAAATAATAAATAGATAAAGCACTTATAAGTACATAAAAGTGCTTTATCTTCCAAAATATGCTATAATTGTAGTATCAAATATATAGGGTGATTACGCATCCTAAGTGTGAGATTATCCCAAGCAATTGGAATTGATACTCACAAAGAAGATTACTAAATAAAGTAATTATCACCGTCCCAATAAACATTGGGTAAAAACATCTAAAATTTAAAAACACTTGGGATAAAACTTATAGACATAAGTAATTGCAATGATTTTAATGATTTATGTTGTGCAAAAATGTGTATTTTACAGTG # Right flank : ATTATAAAAGGAGGTGTTAAAGATGATAAGTACAAGAAAAATAAAAGTAAGATGTGATGATAGTACATTTTATACATTCTTTAGACAAGAGCAAAGAGAACAAAATAAAGCTCTAAATATTGGTATAGGTATAATACATGCTAATGCAGTATTACATAATGTAGATAGTGGAGCAGAAAAGAAACTAAAGAAAAGTATAGAAGGTTTACAAGGTAAAATTGATAAACTTAATAAAGACTTAGAAAAAGAGAAGATAACTGATAAAAAGAAGGAAGAAGTATTAAAAGCGATTGAAACTAATAAAAAGATATTAGATGGAGAGAAGAAGGCTTTTAAAGAATCAGAAGAATACAGAAAAGGAATAGATGAACTTTTCAAAAATACATACTTAAAATCTAATACATTAGACCATGTTTTAGATAGTATGGTTAATATTCAGTACAAAAGAACTTTAAGCCTAGTTACACAAAGGATTAAAAAAGACTATAGTAATGATTTTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAAAGTAACATAGGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 9307-9668 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEZY01000072.1 Clostridioides difficile strain WA151 isolate WA151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9307 30 100.0 36 .............................. ATGTTTATGTACCCATACTAAGTATAAAAATATACT 9373 30 100.0 36 .............................. TATACAACACCAGAAGATTATGAAATGGGAAGAAGT 9439 30 100.0 36 .............................. GTACTTAAAACAGAAGCATAAATAAGCACTCCTAAA 9505 30 100.0 35 .............................. GTAACTCTCTCCATGTGCTTACATCTTGTCTACTA 9570 30 100.0 37 .............................. TTATTAACAAATATAATGATGAATATAGCAGCAAAAA 9637 30 86.7 0 ................G.....AAA..... | AA [9659] ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.8 36 GTTGAAGAATAACATGAGATGTTTTTAAAT # Left flank : AGATGGATTTGATAATATTATCTTAAGAAACTGGTCATATTTTGAATTGCAGAAAATGATTGAGTATAAAGCTGAAAGAGAAGGAATTACTGTAAGATATGTAAATCCAGCATATACAAGTCAGAAGTGTTCAAGATGTGGTGAGATAGACAAGGAAAATAGACAGACACAAGCAAAGTTTAAATGTACTAAATGTGGATTTGAACTTAATGCAGACCATAATGCAGCTATAAATATAGCCAGAAGTATAGAATTTGTATAATTAAATAGATATAATATAAATATAGGGTGATTACGCATCCTAAATGTGAGGTCACCCCAAGTGATTTGGGATAGGCACTCGCAAAGATAGTTGTTAAATGTAGCAATTATCACCGTCCTAGCGAATTGCTAGGTAAAAACATCCGAAATTTAAAAACACTTGGGATAAATTTGATTAATGCTAGTATTTACAATGGTTATGTTGTTTTATTTTATTTAAGAATGTGCATTTTTAAGTG # Right flank : TATTTATATAAAACACTTACTTAAAGAGTAGGTGTTTTTTTAATTGAAAGTAGGTGATTATAATGTAAAAAGTAATAAATAGGTAAAATATGTAATAATTATGTGTTATAATATTTTTAGGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATGTATCAAAGAATTATCCTCCCAACATTTATAAGGGAGGTGAATATACATGGATAATTTTTTACAGGGTGTACTAGCAAGTTTAGTTGCCAGTTTAATAGTTTACTTAACTAGTAAGTTATTTAAAAAAGTAAAAAGCCACTCAAACACGACTAAGAGTGACTTTGACTTTAAACTTACAATCAAGTTTAAAAGAAATAAACATTAATTTTTAGAACTTCACTCTAGTTTCAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTAGAAGAAATATTGCCTATAATATTTTTTATAGTCAATAAAAAGATGAAATTTTTTATACACAATGATG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGAATAACATGAGATGTTTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //