Array 1 86936-85742 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUG010000019.1 Streptococcus thermophilus strain S50 202-S50-19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 86935 36 100.0 35 .................................... TGTATTTTCATTTACTTTATAGCTAAAGTGTTTAA 86864 36 100.0 37 .................................... TAACTGCTGTCTTATCTAGAGGATATTCTCTTAAAAC 86791 36 100.0 37 .................................... ATCTTTGTTCAATTTATTGTAAATATTCGACATTTTA 86718 36 100.0 39 .................................... TCATAAGCTGTTGTTTTTTAAATTGATCGTAATAAGTAT 86643 36 100.0 38 .................................... TCATGATATTTATTATCTGCCGAATGATTTGATAAGCG 86569 36 100.0 36 .................................... GCGAATTCTTCTTGTGTCAGGTTATGACGTGCTCGA 86497 36 100.0 36 .................................... AGACATATAGCTTTTGTCAGCATAATAATTATCATC 86425 36 100.0 36 .................................... TGGGTACGAATACCAACCAGTACAGCGGTCTTTTGA 86353 36 100.0 36 .................................... TTCGTACTGCTCTTGTGCTTTGATAGTGTTCTTTTG 86281 36 100.0 34 .................................... ATAAAGTTACTAAAGTTTACACTTATTGCCCCTT 86211 36 100.0 34 .................................... TGGTAGCGTATGTTCTAACTGGCATTATTATTTC 86141 36 100.0 40 .................................... GTGGCAGTAACTTTAACTTTAATAGAAGCACTCATGATTA 86065 36 97.2 35 ......A............................. TCTTTCTTGATAATATTCAAAGATATTGAAATTAG 85994 36 97.2 37 ......A............................. ATATTTGCAACTCGATTTTCAGCTACTCCGGCAATAG 85921 36 97.2 38 ......A............................. CGTTTGTTTAATTGCAATAATGCTCGCAAACTATCAAG 85847 36 94.4 34 ......A..........T.................. GCTCCTACCCATTGTGGCTCATTCATTTGCTTTA 85777 36 80.6 0 ......A.......................TTTTTT | ========== ====== ====== ====== ==================================== ======================================== ================== 17 36 98.0 36 GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCGACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : GAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAGACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 48231-47470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUG010000028.1 Streptococcus thermophilus strain S50 202-S50-28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 48230 36 100.0 30 .................................... TCCTTTTTGCGTTTTCAAAATAGGTACTTG 48164 36 100.0 30 .................................... TGTGTTTATACTATATAGGTTACCTAGTTA 48098 36 100.0 30 .................................... AGATGAGTATATCTATGTTGTCAGAGGTTC 48032 36 100.0 30 .................................... TCTCTTGCGATACTTGGCCACCCAAGCCTG 47966 36 100.0 29 .................................... TCGGTATATATGCTCCAGGAAGCTACGGG 47901 36 100.0 30 .................................... TCTCAAATATAGTTTCAACAAGATGTTGCT 47835 36 100.0 30 .................................... AGATGAGTATATCTATGTTGTCAGAGGTTC 47769 36 100.0 30 .................................... AATAGATAGTGAAACTGATACCGTCACTGT 47703 36 100.0 30 .................................... TGGAAAATAGTTAAAATAAAGAAAGGAAGT 47637 36 100.0 30 .................................... ACAGTCAGTTATTGGCTTCTGCTGTGGGCG 47571 36 100.0 30 .................................... CTAAAATCGTAAATGGTAAGTTGCACGATG 47505 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.5 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTGAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGAGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 6632-7987 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSUG010000009.1 Streptococcus thermophilus strain S50 202-S50-9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6632 36 100.0 30 .................................... AATTAAAAGATAAGAGAGAGCAACGAGTTT 6698 36 100.0 30 .................................... GCCTTCTTTTAAAAGCTGTGTAATGGCCGA 6764 36 100.0 30 .................................... TCCAGCAGTTGTGATTTTAGCTTGTTCCGC 6830 36 100.0 30 .................................... TTTGTAAACCCTTGATATGACTGCGTTTCT 6896 36 100.0 30 .................................... TAAAACGACTGGATAAGTACCTGCTGGAAT 6962 36 100.0 30 .................................... AATCAGAATCACTTAGACCGTAAGTGACGG 7028 36 100.0 30 .................................... TATGCAAATAAAGGAATACGCCTTGTATAA 7094 36 100.0 30 .................................... AATCAGAATCACTTAGACCGTAAGTGACGG 7160 36 100.0 30 .................................... CCATCGTATATTGAAAGAATATTTACTTCA 7226 36 100.0 30 .................................... CGTTGATTAACTTAGAATTTAGACTAAGAT 7292 36 100.0 30 .................................... TTAACGGTCGTGTGTTCGGTATCGGCTCGA 7358 36 100.0 30 .................................... GCAGTAGTGGTCGAAGCCTCAGCATTTTGC 7424 36 100.0 30 .................................... ATACTGATATGGTTCAGGGTGGCAAGCGTA 7490 36 100.0 30 .................................... GCTTCCTGCCTTGATGACCTCAGAGATGGA 7556 36 100.0 30 .................................... CAACCCAGACATGAATGTCATTAGATATGT 7622 36 100.0 30 .................................... TTTGAGAAAATCAGTTCATGATTATGCGGT 7688 36 100.0 30 .................................... GAACAAGAAACTTATGAAGTCGAAAACCGA 7754 36 100.0 30 .................................... CAAATCTACGTCATAGAGTACGATACCCTC 7820 36 100.0 30 .................................... GAACAAGAAACTTATGAAGTCGAAAACCGA 7886 36 100.0 30 .................................... CAACCCAGACATGAATGTCATTAGATATGT 7952 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTAATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //