Array 1 449668-450236 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFJU010000003.1 Cronobacter sakazakii strain Crono04-YL Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 449668 28 100.0 32 ............................ TAGCATGAGTGAAAAATGTACGCCGCCTGTTC 449728 28 100.0 32 ............................ TTGGCGTATCCTGACCCATACTTACCCTTACC 449788 28 100.0 32 ............................ AACGCCCACGGTTACAATTACGTGTTCACGGG 449848 28 100.0 32 ............................ GACAACGCCGCCCGCGCCGACGCGCGCCTCGG 449908 28 100.0 32 ............................ TGTCTCAACTGGTCGATAACCACAAAGCAGGG 449968 28 100.0 32 ............................ TCTCGCCAGGCGTTTGCGACGTCACCGCCAAG 450028 28 100.0 32 ............................ AACTGCTCGCACTGCTTCGTCTTTTCGCGCAG 450088 28 100.0 32 ............................ GGTCGCTATCACGCCTGTAAAGGCCCGCACGC 450148 28 100.0 33 ............................ GCCGAAACTTTTAGCGGCCTTGCGGGCAACTGA 450209 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATGCGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGACGTTGATTTTTAATACGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAACAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : AACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAGTAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCACGGTAAAATTATCCATAAAATTTATGGTTTCTGCTGTACGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGAGCTAATTAGCTCATATAACGGCGATGACACGTAAGAACCACATTAACTACAGACATTTGCAGGTTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAGTAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAGTTGACATTTAGTGTCATTCATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATATTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 458947-460955 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFJU010000003.1 Cronobacter sakazakii strain Crono04-YL Scaffold3_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 458947 28 100.0 32 ............................ AAAATGACGCTGGCGGCGCTCGACGCCACATT 459007 28 100.0 32 ............................ GCACCCGGCCCGCGACTTGTTGCGAACGTCTT 459067 28 100.0 32 ............................ AACGAGTGACGACGCCTGCGACGCAGGCAGCA 459127 28 100.0 32 ............................ GCGCAGCCGACCGGCCCGCACCACGACCCGGC 459187 28 100.0 32 ............................ CCAGGGTACGCTAATTGGCTCTTGCGCTGCCG 459247 28 100.0 32 ............................ CGGGCGCGCGGTGCTTTGATGTGCTTGGATCT 459307 28 100.0 32 ............................ TCTGCTTTCAGGGTGTGGGAAATATCGCCGCT 459367 28 100.0 32 ............................ CTGAATCGCGATGGTGTCCAGACAGGCACTTT 459427 28 100.0 32 ............................ AGGCGCGAGCGCGCCAGAACGTGCTGGAAACT 459487 28 100.0 33 ............................ GCCAGGATATCGGGCTAACCGTCGCTATCAAAT 459548 28 100.0 32 ............................ GTACTGAACGAAACAGGCGACGCACCCCAACC 459608 28 100.0 32 ............................ TATCTGCGCCGCATGAAACCCACTGACAAAGC 459668 28 100.0 32 ............................ AGCACCTGCCCGAGTGGTGCGTTTACGTTGAA 459728 28 100.0 32 ............................ ACTATACAGCCAGTGGTACGACTGGCAGCGGT 459788 28 100.0 32 ............................ TGCTGGTGTACCAGATGTGGCGCAGGCGCTAC 459848 28 100.0 32 ............................ ATCCCGAAAACATCCCAAAAGTTGCCGCTGTT 459908 28 100.0 33 ............................ CTGGGTGTGGGTAATCGAATTCCGTCGCGTTGG 459969 28 100.0 32 ............................ TGTGCGAGTGGGATAAGGATGACGAGTCTTTC 460029 28 100.0 32 ............................ CCACACGCACAGCAGATATTTCACCCACGCGC 460089 28 100.0 32 ............................ CGGGAAAAATTTTTCAGAGAGTTCGTCGAGGT 460149 28 100.0 32 ............................ TTGACGCGCTCGCGACCTATTCCAGCGCGCTA 460209 28 100.0 32 ............................ ATGGCGAAATTTACAGACGCACACGACCTGTT 460269 28 100.0 32 ............................ TGGCCGCGCACCCGCCCTTCGTCGTCGAGTAT 460329 28 100.0 32 ............................ AAATACCGGCTTAACGCTGTGTGGGATATCTT 460389 28 100.0 32 ............................ TCGGCGGGTTTTTTATCGTCTTTAGTCAAACA 460449 28 100.0 32 ............................ ATTTGGCCCCATCCTTTGCGAATCTGCTCATC 460509 28 100.0 32 ............................ TCGGGTTTGGCTCCAGCCTGGTTAACAAAGGA 460569 28 100.0 32 ............................ ATCACCCCGACATCGCGTGATCGCGATCACAC 460629 28 100.0 32 ............................ GATCAGCGTGAACTATCGCGGCTCGGCGGCAG 460689 28 100.0 32 ............................ GATTCGCGTAGCGCGTCGATACGCGCGCAGTG 460749 28 100.0 32 ............................ ACACTCCACGGCCCCAAGTGTAGCGAAACAGA 460809 28 100.0 32 ............................ AGAAGGCACGCTGTGAGAAAAATTCCGGCGCA 460869 28 100.0 32 ............................ ATGTGTTGATGACCTGCATGGTGTTGGAATGG 460929 27 89.3 0 .....................-CG.... | ========== ====== ====== ====== ============================ ================================= ================== 34 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGCACTGGCAGAATTAGAGGCCACGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCCTGCCACAGGTTCAGGGCTGGCGCACCGTGACGCGCGTACAGGTGAAAAGTAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGGTGGCTGACTGAAGAAGAGGCGCAGCAGCGGCTTTCTGGTTTACAGGTGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCGGTCAGCGGTACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTAGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTTAAGAGGTAAGCAGCATTTATGTTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : AATCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACACCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCAGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 173982-173779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFJU010000001.1 Cronobacter sakazakii strain Crono04-YL Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 173981 29 96.6 28 ....A........................ ATTCACATCAAACCCTTCACGTTATGTC 173924 29 100.0 28 ............................. ATTCACATCAAATCCATCGCGTTATGTG 173867 29 100.0 31 ............................. ACACACGTCAAAATACCAGTCGCGCCTGTTC 173807 29 96.6 0 ................A............ | ========== ====== ====== ====== ============================= =============================== ================== 4 29 98.3 29 GTAGGGTGGGTAAGCGGAGCGCACCCACC # Left flank : CACCATCAAAGGCTCGGTGGATCGCGCCGAGATGCATTACATCATCCGCGATTTCGACCGCGAGAATTTCGAAGCGCGCAAACGCCGTATGATGGATATCGCGAAACAGGTCGGTAAGGGGCTGCACCCGGATTGTTATATTGAGCTGGCCATCGAGGACAGCTATTACAATATGAGCGAGAAGGTGGCGGAGCATCCGCATATCATCGAGATTGCGCGTCAGGCGATTGTCGATTGCGGCATGGAACCGCAGTTAAAGCCGATTCGCGGCGGCACCGACGGTGCGCAGCTGTCGTTTATGGGGCTGCCGTGCCCGAACATTTTCACCGGCGGGTACAATTATCACGGCAAACATGAGTTTGCGACGCTGGAAGGAATGGAAAAAGCGGTGCAGGTGATTGTGCGTATCGCCGAATTGACGGCGCAGCGGGAGGCGTAAAGGCGTAAAAAAGGCGGGTGCGCTGACGCTTACCCGCCCTACAAATTCAGGGATCATTTAT # Right flank : GCGATACCCGCGATAACCGACGCCTTACTCCGCAAAATACCAGTACCCGCTGTTTACCAGCGCGGCCAGCATTGCCAGGAATGACGGATCTTCCAGCGCGTCGCCAAACATCGCCTCATTCAGCACCACTTCATTGGCCAGTTGATGCAGCGCCGGGCGGTGCGGCGTATCTATCTTCTCGCCGTTCACAAAGACGTCCTCGCCGATACGCAATACGCGCAAACCGCCGAGACGTACCAGCGTATCACCCTGTTTCAGCGCATCGTAAATTTCATCCGGCTGGTACGGCGGCTCCGGCGGCGACACATCCAGCTCGTGACGCGACTGGGTGATAAACTCACCAAACCATTCGTTGAAATTATCCGGGTCGCGGATGAGATCCAGCATCATGTCGCGCAGCTTTTCGACTTCCGCAGGCACAATGTCTGCCGGACATTCGCGTGCGGGCACATCCGGATCGCTGTAGCGATGGCTGCCGAGCTCACGCTGCAACACATAAT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGGTGGGTAAGCGGAGCGCACCCACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 798488-797300 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFJU010000001.1 Cronobacter sakazakii strain Crono04-YL Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 798487 29 100.0 32 ............................. GTAACAGACTTACCGGCTGGGAACAGCGACAG 798426 29 100.0 32 ............................. GCCAGTGTCGGAAATAACAACGATCTTGTCGT 798365 29 100.0 32 ............................. TTCTTTTCTCCTGCCGCTGTTGACCTGGTTCA 798304 29 100.0 32 ............................. AGGCTTGTAACCAAGCCTCTTTTTATTTGATT 798243 29 100.0 32 ............................. ACACGCTGATTAACGCCTGGCCTTTGTGGGAA 798182 29 100.0 32 ............................. ATGATGGATCGTTTAGTTATCGTGGTAACATC 798121 29 100.0 32 ............................. ATTATTTTTATGCCAGCAATACGGACTATGCG 798060 29 100.0 32 ............................. GCGACCCGACTGCGCTACTGGACGCGGCTTTT 797999 29 100.0 32 ............................. TCTCTTACATTTGACGTACTGGACGCTACCGA 797938 29 100.0 32 ............................. ACGTTGTCATGAACGGCGGGTTGTATCCGGCT 797877 29 100.0 32 ............................. CTCACACTGGTTGCATTCAACGCAACATAGGA 797816 29 100.0 32 ............................. TACAAGTGGCCGCTTCCACAAATTCGCGAACT 797755 29 100.0 32 ............................. CCAGTTTTCCCGTCGTGGTATTTGACCCGCCC 797694 29 100.0 32 ............................. ATGAACCCACCGGAAGTAGGAAAACTTTCGCT 797633 29 96.6 32 ............T................ TTCTTCGACAAAGGCGGCAAGAAGAAGATCGC 797572 29 93.1 32 A...........T................ TCTGCGAAAATTGCCCCATTCTTCGAAAAAAA 797511 29 96.6 32 ............T................ TGGTCGAAACCACGACTAACGGCGGTAAGACG 797450 29 100.0 32 ............................. GGACGCCTCAACGCTAAGTGCAGCTCTACCCC 797389 29 96.6 32 ............................C AGATCCTGAAGCGCTGTCTGCTGGGCATAAAC 797328 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.1 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGGGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACGAATAATGAATCCGGTTTCGATTTCCAGACGTACGGCGTTAACCGTCGTATTCCGGTGGATTTGGACGGCCTGCGGCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTGGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGC # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTCGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAATGGATAATTCACTCAGGCGATTACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 825199-824501 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGFJU010000001.1 Cronobacter sakazakii strain Crono04-YL Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 825198 29 100.0 32 ............................. ATAACGAGAAAAAAACGGGTGAATCCTGAATG 825137 29 100.0 32 ............................. CTTTCATTAAGAAGGTATTTATTAATATGATC 825076 29 100.0 32 ............................. CTTCACCGTCGCGGGCATTAAACGGGCGGTTT 825015 29 100.0 32 ............................. CCATCATAATCATCCTTGCTTACTTTTGGCTC 824954 29 100.0 32 ............................. GAAGAATCGGAACTGGCAGCATCTTCAACAAC 824893 29 100.0 32 ............................. CGAGAATTTTTCCGCTGACTACATCCCTTGCG 824832 29 100.0 32 ............................. CGATTTAACCGCCAAGTCTCCCGGCTCCGGCT 824771 29 100.0 32 ............................. CATGCACCGGTAAACAGGTACCAACTTACTTC 824710 29 100.0 32 ............................. ATTTGTTGAAAGAATTATGCGAAGCAATCCGA 824649 28 96.6 32 ...........-................. CGGGAGTGATAACAGGTGAGGGCGAGGCGATA 824589 29 96.6 32 T............................ AACGCTGACCTGGCGAACACGCTGCAAAATCT 824528 28 75.9 0 .C.......-...C.T.C.TA........ | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.4 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGTTGACTGTAACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTTAGTACAAAGGGTTACTTTTAGT # Right flank : CCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTTTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCACGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //