Array 1 1135529-1133789 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKPH01000001.1 Salmonella enterica subsp. enterica serovar Hadar strain PIR00533 contig01_PIR00533, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1135528 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 1135467 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 1135406 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 1135345 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 1135284 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 1135223 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 1135162 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 1135101 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 1135040 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 1134979 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 1134918 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 1134857 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 1134796 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 1134735 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 1134674 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 1134613 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 1134552 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 1134491 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 1134429 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 1134367 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 1134306 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 1134245 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 1134184 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 1134123 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 1134062 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 1134001 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 1133940 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 1133879 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 1133818 29 100.0 0 ............................. | A [1133791] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1154068-1152210 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKPH01000001.1 Salmonella enterica subsp. enterica serovar Hadar strain PIR00533 contig01_PIR00533, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1154067 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 1154006 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 1153945 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 1153884 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 1153823 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 1153762 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 1153701 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 1153640 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 1153579 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 1153518 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 1153457 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 1153396 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 1153335 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 1153274 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 1153213 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 1153152 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 1153091 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 1153030 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 1152969 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 1152908 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 1152847 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 1152786 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 1152725 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 1152664 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 1152603 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 1152542 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 1152481 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 1152420 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 1152359 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 1152298 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 1152237 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 31 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //