Array 1 1426-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGQ01000030.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N45926 N45926_contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1425 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 1364 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 1303 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 1242 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 1181 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 1120 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 1059 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 998 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 937 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 876 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 815 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 754 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 693 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 632 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 571 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 510 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 449 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 388 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 327 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 266 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 205 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 144 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 83 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GGTCACGAGGTCTGACGCGGATGTGATGAGTTAGTGTTCCCCGCGCCAGCGGGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15493-14791 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGQ01000032.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CVM N45926 N45926_contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 15492 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 15430 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 15369 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 15308 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 15247 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 15186 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 15125 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 15064 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 15003 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 14942 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 14881 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 14820 29 96.6 0 ............T................ | A [14793] ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //