Array 1 712530-713159 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048750.1 Streptococcus thermophilus strain PNGR-Z-K3 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 712530 36 100.0 30 .................................... TTNNNNNNNNNNNNNNNNNNNNNNNNNNAA 712596 36 100.0 30 .................................... NNNNNNNNNNNNNNNNNNNNNNNNNNNGTT 712662 36 100.0 30 .................................... NNNNNNNNNNNNNNNNNNNNNNNNNNNNAC 712728 36 100.0 30 .................................... TATATTCNNNNNNNNNNNNNNNNNNNNNNG 712794 36 100.0 30 .................................... CATATATGATAGTTTGTCAACACCTTTTAT 712860 36 100.0 30 .................................... TAAAGGGGTTATGCTGTTCAATATGCGTCC 712926 36 100.0 30 .................................... AAACTTGNNNNNNNNNNNNNNNNNNNNNNC 712992 36 100.0 30 .................................... TTANNNNNNNNNNNNNNNNNNNNNNATATA 713058 36 100.0 30 .................................... AAAANNNNNNNNNNNNNNNNNNNNNNNNCA 713124 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TGAAAGAGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAAATCATTTGAGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACATGNNNNNNNNNNNNNNNNNNNNNNTGCAGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACATCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTT # Right flank : CTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACTGANNNNNNNNNNNNNNNNNNNNNNNNNTTGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACGNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTTTTTGTACTCTCAAGATTTAAGTAACTGTACAACAAAAAAGATGGTATCAATTATCTAGAATTGGTTTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [6.7-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 970908-971087 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048750.1 Streptococcus thermophilus strain PNGR-Z-K3 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 970908 36 100.0 36 .................................... CCATATATTTTAGCATTTCCATACACTTTAGCATTT 970980 36 100.0 36 .................................... NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG 971052 36 83.3 0 ..............................TTTTTT | ========== ====== ====== ====== ==================================== ==================================== ================== 3 36 94.4 36 GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Left flank : CCTAATTACCTCGAGAGGGGACGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGATATAAACCTAATTACCTCGAGAGGGGACGGAAACATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAGATATAAACCTAATTACCTCGAGAGGGGACGGAAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNAAGATGATTGATATAAACCTAATTACCTCGAGAGGGGACGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCAGATATAAACCTAATTACCTCGAGAGGGGACGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TGAAAATTTTGAAAACAATATTGACACCGCTTTCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGATGACCTCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCTTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGGGAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTTTTGAG # Questionable array : NO Score: 5.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //