Array 1 57414-53101 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNSS01000020.1 Xanthomonas translucens strain LB5 flattened_line_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 57413 31 100.0 33 ............................... ATGGCTGCACCTCACACCGCATAGTAAACCAAA 57349 31 100.0 36 ............................... TGTGATCTGCCAAGTGCGCCAGTTAAGGTGCCGGCC 57282 31 100.0 33 ............................... TTTTACAAATTGAGCGGATCTGTAGGCCATATG 57218 31 100.0 37 ............................... CTAACGAGCGCGTCATGGCAAAAGTTCGGCTAGTGGA 57150 31 100.0 34 ............................... GATATTGAGGGGCCGGGGGTATACACCGTCACGG 57085 31 100.0 33 ............................... CCACAAACTACTCGATGTACTCGGACAATGCAG 57021 31 100.0 34 ............................... ACCTTCTGGACCCGGGCCAGCACGTTGTGCCGGC 56956 31 100.0 34 ............................... TGGTGCAGACGCGCAACCCGCCAGTGTGCCCCGC 56891 31 100.0 34 ............................... CTCGGCCGCCGGCCCGTCTTGCGTTGGCCTTGGT 56826 31 100.0 35 ............................... AAGAACGCCAAGACGCTGACGATTCCGCTGTACTT 56760 31 100.0 36 ............................... ATCGCGGGTCATGTTGCAATTATTGACCATGCTTTG 56693 31 100.0 36 ............................... CGCCGCTGCTTTCATCAATCCGCTCACCGTGGGCGC 56626 31 100.0 35 ............................... AGCATGTGCTGGCCGGGAGACCGCAGACCTTCCGC 56560 31 100.0 35 ............................... GTGGTATGCGGCCCCGCCCAGCTCCGCGAGCAGCA 56494 31 100.0 36 ............................... TGGGAAGTGAATCCGAACACGCGCCGAGACTCCAGG 56427 31 100.0 36 ............................... ATGGGCGAAATCAAGCACACCGAGGACGGCAAGTAT 56360 31 100.0 36 ............................... ACCATCGAGGCCGAGTTTAACGGCATGTACGTGGAC 56293 31 100.0 36 ............................... ACGTTCAAGTGGACGAGTAGGTTCCACAAGTCGGCG 56226 31 100.0 34 ............................... TTGTCCATCGCGCAGGCGCGCTTAATGACCACGC 56161 31 100.0 34 ............................... TCCTGTTCGAAACTGGGGGTGTGGTTGCCGATGA 56096 31 100.0 34 ............................... TACTACTGCCGGGCCGAGGCACTGGTGGCGGCGA 56031 31 100.0 36 ............................... CGGTACGGGCGAACGTCAGGGCAATGCCGTTGCCGG 55964 31 100.0 34 ............................... AAGTGTGCATCGCCGTGGCCCCTCTTGCGAAGGG 55899 31 100.0 33 ............................... AAAGGGGAGTCAGGTTAAGCACTTCGCGCAGCT 55835 31 100.0 37 ............................... GATTCCCATCTCTTACAGTGTGAGAGAGAACCGGAGC 55767 31 100.0 34 ............................... GATAACTCGAGTCGATTCCGAGATGCGCATGATC 55702 31 100.0 35 ............................... TGAACACGGTCGCTGAAGAACTCGCCACCAGAGAG 55636 31 100.0 36 ............................... CTCATGGCAGGCCTACAGTCCTGGCAGCGCGGGACG 55569 31 100.0 34 ............................... ATTCAACACCTGCATCACCAGCCCGCCCTACTAC 55504 31 100.0 34 ............................... AGGTTTCCGCCGTAGCGAGGGGCCGTCTCGTCGA 55439 31 100.0 35 ............................... CGCCTGCCCTTTGCCAGATTTGGCGGCGTCCAGCA 55373 31 100.0 33 ............................... CAACCCGAGCGGATCTGTAGGCCATATGCGCGA 55309 31 100.0 35 ............................... GTGCGTACTTGGCCGACCGCCGGGCTACGCGCGCG 55243 31 100.0 35 ............................... TTCCGCATGCCGTCCTCTCCGAAATGCTGCGTGAG 55177 31 100.0 34 ............................... CACTTCGCGTGCTCTGGGTGTTTGTCGTCTTTGG 55112 31 100.0 37 ............................... CCTCCCAACTGTGCCGGGCCAGGGCCACCATCGCCGC 55044 31 100.0 35 ............................... CGAATACGGCGCCTGAGGTAATCCCGGTTGTGTCT 54978 31 100.0 36 ............................... CTGGGGGGTTTTGGGCGCTGGGGGTCCGCGTTGAGA 54911 31 100.0 35 ............................... ATGGGCGAAATCAAGCACAGCGCCGATGGCAAGTA 54845 31 100.0 36 ............................... GTCTCCCGCTTCGTAGAGGAGGGTGTGCGCGGCAAG 54778 31 100.0 35 ............................... CAAAATTTCATTACGATGGACGACATCGTCACCGA 54712 31 100.0 37 ............................... ACCTGCTTGCGGCGCAGTTCGGCGGCCTGCAGGTCCA 54644 31 100.0 36 ............................... ACGGCCCTGGCCGAGCGGCAGAAGCTGTTGCTGGCG 54577 31 100.0 35 ............................... AAGCGCGACAGCAGCAAGGCCGGGAACCTGCAGCT 54511 31 100.0 35 ............................... CGCAGTCTCTGGCCGGAGATTGAGCTGAACCGCTC 54445 31 96.8 35 .....................T......... TGTACAAGGCGCACAGGCTAGCATGGCTCCATGTC 54379 31 100.0 34 ............................... TCGGATGTGGCAAGAGCGGCGTCGTCCAGATCCG 54314 31 100.0 36 ............................... CGGGACGCGGCGCTGGGTGTCGTGGACGCCGCGCGC 54247 31 100.0 33 ............................... ACAGACCTGGCCCAGCGGCAGAAGCTGTTGCTG 54183 31 100.0 33 ............................... ACGGTGATCCGATGCTGGGCGATGTCTGGGATG 54119 31 100.0 35 ............................... CAGTTTCCCCCCGCCGTTGGACGCGGGCGAGGGTC 54053 31 100.0 34 ............................... GGTGATCATCCTCGACGAGTGCTACACCGTTTTC 53988 31 100.0 34 ............................... TCCGTTGGGCCAGGTAGTGATGCACAGCCAGAGT 53923 31 100.0 35 ............................... GTGATGTGTCTATCGCCCCAGCCTGGATGATTCTC 53857 31 100.0 34 ............................... TCGATGCCGGCGGCCTGGCAAATCTCAGTCGCCC 53792 31 100.0 35 ............................... ACGACAGAAGCAATCACAGTTACTGCAATACTGAA 53726 31 100.0 35 ............................... CTGGCCAACCTGGTGGTGCTGGTCTTCACTTCCAG 53660 31 100.0 35 ............................... TCGGTATAGCGGTGCTTGAGGTAAAGCAGGCAAAG 53594 31 100.0 36 ............................... CGTTACCAGCGCAGCGCCATCCTGATCGACGAAACG 53527 31 100.0 34 ............................... TCCAAGTCGGGATGGTCCGCGGCGCCGGCGCGGC C [53514] 53461 31 100.0 36 ............................... ATGGCTCAGTCTCGCTGGCGGGTGGCCGGTGTGGCC 53394 31 100.0 35 ............................... ATCACGTACTAGCAGCCCGAGCATCCCCAATGAGG 53328 31 100.0 35 ............................... ATATGCCCGGTAGCGGCCGTCTTCTCCCATACCCA 53262 31 100.0 33 ............................... CCGTACTACGTCACCGGCAACTTCGAGGGTGGT 53198 31 100.0 35 ............................... ACCCATGCCATGTCGTCCCGGCGCCACTCGACATC 53132 31 87.1 0 ......CG.......C.........C..... | G [53105] ========== ====== ====== ====== =============================== ===================================== ================== 66 31 99.8 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTACAAGAAAAACACTAACCTCTTCCGCTCACTACAGGTCCGCGGCGGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : TGGCCTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAATGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGACCGTTCACGGTGACCTCGGCCTTGTACTTGCCCGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //