Array 1 33818-34985 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEOV010000019.1 Pseudomonas aeruginosa strain PAL1.60 NODE_19_length_81990_cov_25.2822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 33818 28 100.0 32 ............................ ACCAGCGCGGAAAACGCAGGGTCGCGCGTCTG 33878 28 100.0 32 ............................ TGACGCTGACCGACGCCGTGGGCATGGAATCG 33938 28 100.0 32 ............................ TCGGGCATCAGCGCTATCGCCCTGGCCTGGAC 33998 28 100.0 32 ............................ TGGTCCATCTGCGCGATGGTGTCGCCCAGTTC 34058 28 100.0 32 ............................ ACCGACGCCAGCCGCCGCTCCTCGTTGGCAAG 34118 28 100.0 32 ............................ GTTGAACAACGTCCGGAACGGCGCGATGAACA 34178 28 100.0 32 ............................ TGCTCGTATCCGTCGCCTGGGTTCCCGTTGAC 34238 28 100.0 32 ............................ TGGACCGAGCAGCGGCGACTCAGGGAGGGCCA 34298 28 100.0 32 ............................ TTTCTGGGAGTCCAAGGAACTGGCCAAGGCTC 34358 28 100.0 32 ............................ AAGTACGCTTTGCCTTGGCAATCGCTTCCGTG 34418 28 100.0 32 ............................ TGATAGGCGCTCAAGCGAAGCCCCTCGAACTC 34478 28 100.0 32 ............................ TGAGCCAGGCCCTGAACATCGCCATCGGCGTG 34538 28 100.0 32 ............................ TGCCCGACGTGCTAGTAAGGCTCACTAGCTGG 34598 28 100.0 32 ............................ AATGACCTGGCCGACATGGTGGCGGCTGGTGC 34658 28 100.0 32 ............................ TTGATGCCGGCATACACAGCGGCCAGCAGCGC 34718 28 100.0 32 ............................ TATCCGCACGAACTCCAAGCCACCGGACATTC 34778 28 100.0 32 ............................ ACCCGTAAGACCCGAGCCGCCACCAGTACCAC 34838 28 100.0 32 ............................ AAAAATAATCGAACGCATCTTGCACCCACTTA 34898 28 100.0 32 ............................ TTTGAGTGAGCGGTAGTGCGCTATGCGTGAGC 34958 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCATCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 44495-43507 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEOV010000019.1 Pseudomonas aeruginosa strain PAL1.60 NODE_19_length_81990_cov_25.2822, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 44494 28 100.0 32 ............................ TGAACGACGGCGCCGCCGGCCGTGGAACCGGA 44434 28 100.0 32 ............................ GAACAGTTCTGGCCGTTGCTCTTGAGCGTGTA 44374 28 100.0 32 ............................ GTCATGTCAAAGCCCTACCGGGTTCGAGATAA 44314 28 100.0 32 ............................ AGTCTGCAAACGCCCAGGCGTACCAGTTCGAC 44254 28 100.0 32 ............................ AAGAGGTTCATGTTGAACCAGTAGTCCGGGAA 44194 28 100.0 32 ............................ GATGATCACCCCGATGATCTGAACATCCTCAG 44134 28 100.0 32 ............................ TGCGGCACGCCTGGGAGTCACTGAGTACGGGC 44074 28 100.0 32 ............................ AACAACAACAGCCAGGTGCTGGCCACCACCAA 44014 28 100.0 32 ............................ AATAGCCCGTACAGTCCGGTGGGGATCGTTGA 43954 28 100.0 32 ............................ AAGCGCTGCGGGCTGTCGCGTTGCGCTGCTCG 43894 28 100.0 32 ............................ TCGCCGACCGCGTTCCCCGTGCCGGGGTGCTG 43834 28 100.0 32 ............................ ACAGCGGCTCGCCGTTGGCACCGAGGGCGGTC 43774 28 100.0 32 ............................ AAGGACTTGGCCGGCTTGAAGAGCTACCTGGG 43714 28 100.0 32 ............................ ATCCGGCGCATGAGCGAACGCCCCTCCCAGAT 43654 28 100.0 32 ............................ GTCATCGGACGAATCGCGTCACCAACCGCCCG 43594 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 43534 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGTCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //