Array 1 1041678-1042847 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP011098.1 Mannheimia haemolytica strain 89010807N isolate laboratory, frozen stock chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
   1041678	    32	 100.0	    36	................................	CCTATAACGAGCAATGGCATTTTGATCTACGGTAAA 	
   1041746	    32	 100.0	    34	................................	TTCTTGAATACCTCCGGAGTCAGTTAAGATAAGG   	
   1041812	    32	 100.0	    35	................................	CTTTTTCAAGAATCAAGATTAAGAGATCCAAACAA  	
   1041879	    32	 100.0	    34	................................	TCCGACACTTGCCCGTCTGCACTCGCCCTAGTGC   	
   1041945	    32	 100.0	    36	................................	CACCGCTGCTACTTCGGTTATCGGAGTAGTTTGCAC 	
   1042013	    32	 100.0	    35	................................	GTGGCACAGTAACACGAGCAGATGCTGATAAACGC  	
   1042080	    32	 100.0	    34	................................	CAGCAGCCGTTGTTACCGTGGTGCAATGCTTGCG   	
   1042146	    32	 100.0	    36	................................	TACACTTATTGCCATAGGGTAGTAGTAATCTTTTAC 	
   1042214	    32	 100.0	    34	................................	TGCGATTTTTGGATTTTTCGGGCGATAAATGATA   	
   1042280	    32	  96.9	    34	.....................T..........	TCGTGGCTGGTTATACAAAGAAAAGCATTGTTGG   	
   1042346	    32	  93.8	    35	G....................T..........	TTAAATCTAAAGCTAAAGCTATTTTATTAATTAAA  	
   1042413	    32	  93.8	    34	G....................T..........	TTTACCGTTTACCGATTGGATTTTAATGCTAGAG   	
   1042479	    32	  93.8	    35	G....................T..........	CCTAAATTGCCGTAAAAATCTGCCATTAGCTACGC  	
   1042546	    32	  93.8	    35	G....................T..........	CTCATAACGAATCCAATCCTGTTCGGTTAATCCCC  	
   1042613	    32	  93.8	    37	G....................T..........	AGGGGCGTGTACCGCAATCAATTTTAATTATAACCAA	
   1042682	    32	  93.8	    35	G....................T..........	TTTATCTGTTGCGGTCAATTGTATATCTTGAATTT  	
   1042749	    32	  93.8	    35	G....................T..........	CTCGTCTTGAATTGGAAAATCAAGGGCGACAATAG  	
   1042816	    32	  87.5	     0	G.........T..........T.T........	|                                    	
==========	======	======	======	================================	=====================================	==================
        18	    32	  96.7	    35	CCAGCCACCTACGCGTGGCTGCGAATTGAAAC	                                     	       

# Left flank :   TGAGGAATTAGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCCGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTGCGGGCGCAATATTCTGTGTTTGAGTGTGATGTTACTCCTGCTCAGTGGGTAACATTGAAAAATAAATTATTGGCAACTTACAACCCAGACTGTGATAGTTTGCGCTTTTACCATTTAGGCAGTAAATGGAGGAATAAAGTTGAGCACCATGGCGCAAAACCTTCAGTGGATATTTTTAAAGATACGCTGATTTTATAAATCGCTAGCCTGTAGTTCTCATAAAAATGTAGCAAGGTTAGCGAATCTATATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGCACAATATATTGGCGATATGCTATACTTTATCCACTCTCTACAAAACGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAATACGTTATCTTATAGGGA
# Right flank :  CGGTGTACCCACAAATCCTATGTTTTCGCCATTGGCTGCTACCTTCGCATCAATATATATTGAAATATCAATGGCAAATTTGTATGTTGTTAATTAGACTGATTGCATCTGCTATGTATCATAGTAATGACGAAAATATTCTATTTTGCAAAAAATAATCAGAAATTACCCGCTTGTTCGAACTGAGTTTTTGTTTTCTAAGATGTGAAATGATACACTTTAGATAGTTTTAAAATATAGAGACAGTAAGATGAGTAGTACGGAATTATTAGTGAATGTTACCCCAAGCGAAACAAGGGTAGCGTTGGTAGAAAACGGAATATTGAAAGAATTACATATTGAGCGGGAAGCTAAACGCGGGATTGTTGGTAATATTTATAAGGGAAGGGTGACAAGGGTATTACCAGGTATGCAATCTGCTTTTGTGGATATCGGCTTGGAGAAGGCTGCTTTTTTGCACGCTTCTGACATCGTTTCGCATACGGAATGTGTTGATGAAA

# Questionable array : NO	 Score: 8.91
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     CCAGCCACCTACGCGTGGCTGCGAATTGAAAC
# Alternate repeat :   CAGCCACCTACGCGTGGCTGTGAATTGAAAC

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [8,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 91% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.00,-2.60] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-3] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [10.15,0   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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